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A library for working with OME-XML metadata structures.
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/*
* #%L
* OME-XML Java library for working with OME-XML metadata structures.
* %%
* Copyright (C) 2006 - 2016 Open Microscopy Environment:
* - Massachusetts Institute of Technology
* - National Institutes of Health
* - University of Dundee
* - Board of Regents of the University of Wisconsin-Madison
* - Glencoe Software, Inc.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*
* The views and conclusions contained in the software and documentation are
* those of the authors and should not be interpreted as representing official
* policies, either expressed or implied, of any organization.
* #L%
*/
/*-----------------------------------------------------------------------------
*
* THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
*
*-----------------------------------------------------------------------------
*/
package ome.xml.model;
import java.util.ArrayList;
import java.util.List;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import ome.xml.model.enums.*;
import ome.xml.model.enums.handlers.*;
import ome.xml.model.primitives.*;
import ome.units.quantity.*;
import ome.units.unit.Unit;
public class LightSourceSettings extends Settings
{
// Base: Settings -- Name: LightSourceSettings -- Type: LightSourceSettings -- modelBaseType: Settings -- langBaseType: Object
// -- Constants --
public static final String NAMESPACE = "http://www.openmicroscopy.org/Schemas/OME/2016-06";
/** Logger for this class. */
private static final Logger LOGGER =
LoggerFactory.getLogger(LightSourceSettings.class);
// -- Instance variables --
// ID property
private String id;
// Attenuation property
private PercentFraction attenuation;
// Wavelength property
private Length wavelength;
// LightSourceRef back reference
private LightSource lightSource;
// MicrobeamManipulation_BackReference back reference
private MicrobeamManipulation microbeamManipulation;
// -- Constructors --
/** Default constructor. */
public LightSourceSettings()
{
super();
}
/**
* Constructs LightSourceSettings recursively from an XML DOM tree.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public LightSourceSettings(Element element, OMEModel model)
throws EnumerationException
{
update(element, model);
}
/** Copy constructor. */
public LightSourceSettings(LightSourceSettings orig)
{
super(orig);
id = orig.id;
attenuation = orig.attenuation;
wavelength = orig.wavelength;
lightSource = orig.lightSource;
microbeamManipulation = orig.microbeamManipulation;
}
// -- Custom content from LightSourceSettings specific template --
// -- OMEModelObject API methods --
/**
* Updates LightSourceSettings recursively from an XML DOM tree. NOTE: No
* properties are removed, only added or updated.
* @param element Root of the XML DOM tree to construct a model object
* graph from.
* @param model Handler for the OME model which keeps track of instances
* and references seen during object population.
* @throws EnumerationException If there is an error instantiating an
* enumeration during model object creation.
*/
public void update(Element element, OMEModel model)
throws EnumerationException
{
super.update(element, model);
if (!element.hasAttribute("ID") && getID() == null)
{
// TODO: Should be its own exception
throw new RuntimeException(
"LightSourceSettings missing required ID property.");
}
if (element.hasAttribute("ID"))
{
// ID property
setID(String.valueOf(
element.getAttribute("ID")));
// Adding this model object to the model handler
model.addModelObject(getID(), this);
}
if (element.hasAttribute("Attenuation"))
{
// Attribute property Attenuation
setAttenuation(PercentFraction.valueOf(
element.getAttribute("Attenuation")));
}
if (element.hasAttribute("Wavelength"))
{
// Attribute property Wavelength with unit companion WavelengthUnit
String unitSymbol = element.getAttribute("WavelengthUnit");
if ((unitSymbol == null) || (unitSymbol.isEmpty()))
{
// Use default value specified in the xsd model
unitSymbol = getWavelengthUnitXsdDefault();
}
UnitsLength modelUnit =
UnitsLength.fromString(unitSymbol);
PositiveFloat baseValue = PositiveFloat.valueOf(
element.getAttribute("Wavelength"));
setWavelength(UnitsLengthEnumHandler.getQuantity(baseValue, modelUnit));
}
}
// -- LightSourceSettings API methods --
public boolean link(Reference reference, OMEModelObject o)
{
return super.link(reference, o);
}
// Property ID
public String getID()
{
return id;
}
public void setID(String id)
{
this.id = id;
}
// Property Attenuation
public PercentFraction getAttenuation()
{
return attenuation;
}
public void setAttenuation(PercentFraction attenuation)
{
this.attenuation = attenuation;
}
// Property Wavelength with unit companion WavelengthUnit
public Length getWavelength()
{
return wavelength;
}
public void setWavelength(Length wavelength)
{
this.wavelength = wavelength;
}
// Property WavelengthUnit is a unit companion
@SuppressWarnings("SameReturnValue")
public static String getWavelengthUnitXsdDefault()
{
return "nm";
}
// Property LightSourceRef
public LightSource getLightSource()
{
return lightSource;
}
public void setLightSource(LightSource lightSource)
{
this.lightSource = lightSource;
}
// Property MicrobeamManipulation_BackReference
public MicrobeamManipulation getMicrobeamManipulation()
{
return microbeamManipulation;
}
public void setMicrobeamManipulation(MicrobeamManipulation microbeamManipulation_BackReference)
{
this.microbeamManipulation = microbeamManipulation_BackReference;
}
public Element asXMLElement(Document document)
{
return asXMLElement(document, null);
}
public Element asXMLElement(Document document, Element LightSourceSettings_element)
{
// Creating XML block for LightSourceSettings
if (LightSourceSettings_element == null)
{
LightSourceSettings_element =
document.createElementNS(NAMESPACE, "LightSourceSettings");
}
// Ensure any base annotations add their Elements first
super.asXMLElement(document, LightSourceSettings_element);
if (id != null)
{
// Attribute property ID
LightSourceSettings_element.setAttribute("ID", id);
}
if (attenuation != null)
{
// Attribute property Attenuation
LightSourceSettings_element.setAttribute("Attenuation", attenuation.toString());
}
if (wavelength != null)
{
// Attribute property Wavelength with units companion prop.unitsCompanion.name
if (wavelength.value() != null)
{
LightSourceSettings_element.setAttribute("Wavelength", wavelength.value().toString());
}
if (wavelength.unit() != null)
{
try
{
UnitsLength enumUnits = UnitsLength.fromString(wavelength.unit().getSymbol());
LightSourceSettings_element.setAttribute("WavelengthUnit", enumUnits.toString());
} catch (EnumerationException e)
{
LOGGER.debug("Unable to create xml for LightSourceSettings:WavelengthUnit: {}", e.toString());
}
}
}
// *** IGNORING *** Skipped back reference LightSourceRef
// *** IGNORING *** Skipped back reference MicrobeamManipulation_BackReference
return LightSourceSettings_element;
}
}
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