
org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader Maven / Gradle / Ivy
/* Copyright (C) 2003-2007 The Jmol Development Team
* 2010 Egon Willighagen
*
* Contact: [email protected]
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*/
package org.openscience.cdk.io.iterator;
import org.openscience.cdk.exception.CDKException;
import org.openscience.cdk.interfaces.IChemObject;
import org.openscience.cdk.io.ChemObjectIO;
import org.openscience.cdk.io.IChemObjectReader;
import org.openscience.cdk.io.IChemObjectReaderErrorHandler;
import org.openscience.cdk.io.ISimpleChemObjectReader;
/**
* Abstract class that IteratingChemObjectReader's can implement to have it
* take care of basic stuff, like managing the ReaderListeners.
*
* @cdk.module io
* @cdk.githash
*/
public abstract class DefaultIteratingChemObjectReader extends ChemObjectIO implements
IIteratingChemObjectReader {
protected IChemObjectReader.Mode mode = IChemObjectReader.Mode.RELAXED;
protected IChemObjectReaderErrorHandler errorHandler = null;
@Override
public boolean accepts(Class extends IChemObject> objectClass) {
return false; // it's an iterator, idiot.
}
/* Extra convenience methods */
/**
* File IO generally does not support removing of entries.
*/
@Override
public void remove() {
throw new UnsupportedOperationException();
}
@Override
public void setReaderMode(ISimpleChemObjectReader.Mode mode) {
this.mode = mode;
}
/** {@inheritDoc} */
@Override
public void setErrorHandler(IChemObjectReaderErrorHandler handler) {
this.errorHandler = handler;
}
/** {@inheritDoc} */
@Override
public void handleError(String message) throws CDKException {
if (this.errorHandler != null) this.errorHandler.handleError(message);
if (this.mode == Mode.STRICT) throw new CDKException(message);
}
/** {@inheritDoc} */
@Override
public void handleError(String message, Exception exception) throws CDKException {
if (this.errorHandler != null) this.errorHandler.handleError(message, exception);
if (this.mode == Mode.STRICT) {
throw new CDKException(message, exception);
}
}
/** {@inheritDoc} */
@Override
public void handleError(String message, int row, int colStart, int colEnd) throws CDKException {
if (this.errorHandler != null) this.errorHandler.handleError(message, row, colStart, colEnd);
if (this.mode == Mode.STRICT) throw new CDKException(message);
}
/** {@inheritDoc} */
@Override
public void handleError(String message, int row, int colStart, int colEnd, Exception exception) throws CDKException {
if (this.errorHandler != null) this.errorHandler.handleError(message, row, colStart, colEnd, exception);
if (this.mode == Mode.STRICT) {
throw new CDKException(message, exception);
}
}
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy