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A strict streaming parser for VCF 4.1/4.2.
The newest version!
package org.pharmgkb.parser.vcf;
import org.pharmgkb.parser.vcf.model.VcfMetadata;
import org.pharmgkb.parser.vcf.model.VcfPosition;
import org.pharmgkb.parser.vcf.model.VcfSample;
import java.util.List;
/**
* This interface controls what is actually done for each data line in a VCF file.
*
* @author Mark Woon
*/
public interface VcfLineParser {
void parseLine(VcfMetadata metadata, VcfPosition position, List sampleData);
}