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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
package org.phenopackets.schema.v1.core;
/**
*
* Message to indicate a disease (diagnosis) and its recorded onset.
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Disease}
*/
public final class Disease extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.core.Disease)
DiseaseOrBuilder {
private static final long serialVersionUID = 0L;
// Use Disease.newBuilder() to construct.
private Disease(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Disease() {
tumorStage_ = java.util.Collections.emptyList();
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Disease();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private Disease(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
int mutable_bitField0_ = 0;
com.google.protobuf.UnknownFieldSet.Builder unknownFields =
com.google.protobuf.UnknownFieldSet.newBuilder();
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
org.phenopackets.schema.v1.core.OntologyClass.Builder subBuilder = null;
if (term_ != null) {
subBuilder = term_.toBuilder();
}
term_ = input.readMessage(org.phenopackets.schema.v1.core.OntologyClass.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom(term_);
term_ = subBuilder.buildPartial();
}
break;
}
case 18: {
org.phenopackets.schema.v1.core.Age.Builder subBuilder = null;
if (onsetCase_ == 2) {
subBuilder = ((org.phenopackets.schema.v1.core.Age) onset_).toBuilder();
}
onset_ =
input.readMessage(org.phenopackets.schema.v1.core.Age.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.Age) onset_);
onset_ = subBuilder.buildPartial();
}
onsetCase_ = 2;
break;
}
case 26: {
org.phenopackets.schema.v1.core.AgeRange.Builder subBuilder = null;
if (onsetCase_ == 3) {
subBuilder = ((org.phenopackets.schema.v1.core.AgeRange) onset_).toBuilder();
}
onset_ =
input.readMessage(org.phenopackets.schema.v1.core.AgeRange.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.AgeRange) onset_);
onset_ = subBuilder.buildPartial();
}
onsetCase_ = 3;
break;
}
case 34: {
org.phenopackets.schema.v1.core.OntologyClass.Builder subBuilder = null;
if (onsetCase_ == 4) {
subBuilder = ((org.phenopackets.schema.v1.core.OntologyClass) onset_).toBuilder();
}
onset_ =
input.readMessage(org.phenopackets.schema.v1.core.OntologyClass.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.OntologyClass) onset_);
onset_ = subBuilder.buildPartial();
}
onsetCase_ = 4;
break;
}
case 42: {
if (!((mutable_bitField0_ & 0x00000001) != 0)) {
tumorStage_ = new java.util.ArrayList();
mutable_bitField0_ |= 0x00000001;
}
tumorStage_.add(
input.readMessage(org.phenopackets.schema.v1.core.OntologyClass.parser(), extensionRegistry));
break;
}
default: {
if (!parseUnknownField(
input, unknownFields, extensionRegistry, tag)) {
done = true;
}
break;
}
}
}
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(this);
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(
e).setUnfinishedMessage(this);
} finally {
if (((mutable_bitField0_ & 0x00000001) != 0)) {
tumorStage_ = java.util.Collections.unmodifiableList(tumorStage_);
}
this.unknownFields = unknownFields.build();
makeExtensionsImmutable();
}
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Disease_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Disease_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.Disease.class, org.phenopackets.schema.v1.core.Disease.Builder.class);
}
private int onsetCase_ = 0;
private java.lang.Object onset_;
public enum OnsetCase
implements com.google.protobuf.Internal.EnumLite {
AGE_OF_ONSET(2),
AGE_RANGE_OF_ONSET(3),
CLASS_OF_ONSET(4),
ONSET_NOT_SET(0);
private final int value;
private OnsetCase(int value) {
this.value = value;
}
/**
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static OnsetCase valueOf(int value) {
return forNumber(value);
}
public static OnsetCase forNumber(int value) {
switch (value) {
case 2: return AGE_OF_ONSET;
case 3: return AGE_RANGE_OF_ONSET;
case 4: return CLASS_OF_ONSET;
case 0: return ONSET_NOT_SET;
default: return null;
}
}
public int getNumber() {
return this.value;
}
};
public OnsetCase
getOnsetCase() {
return OnsetCase.forNumber(
onsetCase_);
}
public static final int TERM_FIELD_NUMBER = 1;
private org.phenopackets.schema.v1.core.OntologyClass term_;
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public boolean hasTerm() {
return term_ != null;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public org.phenopackets.schema.v1.core.OntologyClass getTerm() {
return term_ == null ? org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : term_;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTermOrBuilder() {
return getTerm();
}
public static final int AGE_OF_ONSET_FIELD_NUMBER = 2;
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public boolean hasAgeOfOnset() {
return onsetCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public org.phenopackets.schema.v1.core.Age getAgeOfOnset() {
if (onsetCase_ == 2) {
return (org.phenopackets.schema.v1.core.Age) onset_;
}
return org.phenopackets.schema.v1.core.Age.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public org.phenopackets.schema.v1.core.AgeOrBuilder getAgeOfOnsetOrBuilder() {
if (onsetCase_ == 2) {
return (org.phenopackets.schema.v1.core.Age) onset_;
}
return org.phenopackets.schema.v1.core.Age.getDefaultInstance();
}
public static final int AGE_RANGE_OF_ONSET_FIELD_NUMBER = 3;
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public boolean hasAgeRangeOfOnset() {
return onsetCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public org.phenopackets.schema.v1.core.AgeRange getAgeRangeOfOnset() {
if (onsetCase_ == 3) {
return (org.phenopackets.schema.v1.core.AgeRange) onset_;
}
return org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public org.phenopackets.schema.v1.core.AgeRangeOrBuilder getAgeRangeOfOnsetOrBuilder() {
if (onsetCase_ == 3) {
return (org.phenopackets.schema.v1.core.AgeRange) onset_;
}
return org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
}
public static final int CLASS_OF_ONSET_FIELD_NUMBER = 4;
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public boolean hasClassOfOnset() {
return onsetCase_ == 4;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public org.phenopackets.schema.v1.core.OntologyClass getClassOfOnset() {
if (onsetCase_ == 4) {
return (org.phenopackets.schema.v1.core.OntologyClass) onset_;
}
return org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getClassOfOnsetOrBuilder() {
if (onsetCase_ == 4) {
return (org.phenopackets.schema.v1.core.OntologyClass) onset_;
}
return org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
}
public static final int TUMOR_STAGE_FIELD_NUMBER = 5;
private java.util.List tumorStage_;
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public java.util.List getTumorStageList() {
return tumorStage_;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public java.util.List
getTumorStageOrBuilderList() {
return tumorStage_;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public int getTumorStageCount() {
return tumorStage_.size();
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClass getTumorStage(int index) {
return tumorStage_.get(index);
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTumorStageOrBuilder(
int index) {
return tumorStage_.get(index);
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (term_ != null) {
output.writeMessage(1, getTerm());
}
if (onsetCase_ == 2) {
output.writeMessage(2, (org.phenopackets.schema.v1.core.Age) onset_);
}
if (onsetCase_ == 3) {
output.writeMessage(3, (org.phenopackets.schema.v1.core.AgeRange) onset_);
}
if (onsetCase_ == 4) {
output.writeMessage(4, (org.phenopackets.schema.v1.core.OntologyClass) onset_);
}
for (int i = 0; i < tumorStage_.size(); i++) {
output.writeMessage(5, tumorStage_.get(i));
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (term_ != null) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(1, getTerm());
}
if (onsetCase_ == 2) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(2, (org.phenopackets.schema.v1.core.Age) onset_);
}
if (onsetCase_ == 3) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(3, (org.phenopackets.schema.v1.core.AgeRange) onset_);
}
if (onsetCase_ == 4) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(4, (org.phenopackets.schema.v1.core.OntologyClass) onset_);
}
for (int i = 0; i < tumorStage_.size(); i++) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(5, tumorStage_.get(i));
}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.core.Disease)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.core.Disease other = (org.phenopackets.schema.v1.core.Disease) obj;
if (hasTerm() != other.hasTerm()) return false;
if (hasTerm()) {
if (!getTerm()
.equals(other.getTerm())) return false;
}
if (!getTumorStageList()
.equals(other.getTumorStageList())) return false;
if (!getOnsetCase().equals(other.getOnsetCase())) return false;
switch (onsetCase_) {
case 2:
if (!getAgeOfOnset()
.equals(other.getAgeOfOnset())) return false;
break;
case 3:
if (!getAgeRangeOfOnset()
.equals(other.getAgeRangeOfOnset())) return false;
break;
case 4:
if (!getClassOfOnset()
.equals(other.getClassOfOnset())) return false;
break;
case 0:
default:
}
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
if (hasTerm()) {
hash = (37 * hash) + TERM_FIELD_NUMBER;
hash = (53 * hash) + getTerm().hashCode();
}
if (getTumorStageCount() > 0) {
hash = (37 * hash) + TUMOR_STAGE_FIELD_NUMBER;
hash = (53 * hash) + getTumorStageList().hashCode();
}
switch (onsetCase_) {
case 2:
hash = (37 * hash) + AGE_OF_ONSET_FIELD_NUMBER;
hash = (53 * hash) + getAgeOfOnset().hashCode();
break;
case 3:
hash = (37 * hash) + AGE_RANGE_OF_ONSET_FIELD_NUMBER;
hash = (53 * hash) + getAgeRangeOfOnset().hashCode();
break;
case 4:
hash = (37 * hash) + CLASS_OF_ONSET_FIELD_NUMBER;
hash = (53 * hash) + getClassOfOnset().hashCode();
break;
case 0:
default:
}
hash = (29 * hash) + unknownFields.hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Disease parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Disease parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Disease parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.core.Disease prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
*
* Message to indicate a disease (diagnosis) and its recorded onset.
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Disease}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.core.Disease)
org.phenopackets.schema.v1.core.DiseaseOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Disease_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Disease_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.Disease.class, org.phenopackets.schema.v1.core.Disease.Builder.class);
}
// Construct using org.phenopackets.schema.v1.core.Disease.newBuilder()
private Builder() {
maybeForceBuilderInitialization();
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
maybeForceBuilderInitialization();
}
private void maybeForceBuilderInitialization() {
if (com.google.protobuf.GeneratedMessageV3
.alwaysUseFieldBuilders) {
getTumorStageFieldBuilder();
}
}
@java.lang.Override
public Builder clear() {
super.clear();
if (termBuilder_ == null) {
term_ = null;
} else {
term_ = null;
termBuilder_ = null;
}
if (tumorStageBuilder_ == null) {
tumorStage_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000001);
} else {
tumorStageBuilder_.clear();
}
onsetCase_ = 0;
onset_ = null;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Disease_descriptor;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Disease getDefaultInstanceForType() {
return org.phenopackets.schema.v1.core.Disease.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Disease build() {
org.phenopackets.schema.v1.core.Disease result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Disease buildPartial() {
org.phenopackets.schema.v1.core.Disease result = new org.phenopackets.schema.v1.core.Disease(this);
int from_bitField0_ = bitField0_;
if (termBuilder_ == null) {
result.term_ = term_;
} else {
result.term_ = termBuilder_.build();
}
if (onsetCase_ == 2) {
if (ageOfOnsetBuilder_ == null) {
result.onset_ = onset_;
} else {
result.onset_ = ageOfOnsetBuilder_.build();
}
}
if (onsetCase_ == 3) {
if (ageRangeOfOnsetBuilder_ == null) {
result.onset_ = onset_;
} else {
result.onset_ = ageRangeOfOnsetBuilder_.build();
}
}
if (onsetCase_ == 4) {
if (classOfOnsetBuilder_ == null) {
result.onset_ = onset_;
} else {
result.onset_ = classOfOnsetBuilder_.build();
}
}
if (tumorStageBuilder_ == null) {
if (((bitField0_ & 0x00000001) != 0)) {
tumorStage_ = java.util.Collections.unmodifiableList(tumorStage_);
bitField0_ = (bitField0_ & ~0x00000001);
}
result.tumorStage_ = tumorStage_;
} else {
result.tumorStage_ = tumorStageBuilder_.build();
}
result.onsetCase_ = onsetCase_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.core.Disease) {
return mergeFrom((org.phenopackets.schema.v1.core.Disease)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.phenopackets.schema.v1.core.Disease other) {
if (other == org.phenopackets.schema.v1.core.Disease.getDefaultInstance()) return this;
if (other.hasTerm()) {
mergeTerm(other.getTerm());
}
if (tumorStageBuilder_ == null) {
if (!other.tumorStage_.isEmpty()) {
if (tumorStage_.isEmpty()) {
tumorStage_ = other.tumorStage_;
bitField0_ = (bitField0_ & ~0x00000001);
} else {
ensureTumorStageIsMutable();
tumorStage_.addAll(other.tumorStage_);
}
onChanged();
}
} else {
if (!other.tumorStage_.isEmpty()) {
if (tumorStageBuilder_.isEmpty()) {
tumorStageBuilder_.dispose();
tumorStageBuilder_ = null;
tumorStage_ = other.tumorStage_;
bitField0_ = (bitField0_ & ~0x00000001);
tumorStageBuilder_ =
com.google.protobuf.GeneratedMessageV3.alwaysUseFieldBuilders ?
getTumorStageFieldBuilder() : null;
} else {
tumorStageBuilder_.addAllMessages(other.tumorStage_);
}
}
}
switch (other.getOnsetCase()) {
case AGE_OF_ONSET: {
mergeAgeOfOnset(other.getAgeOfOnset());
break;
}
case AGE_RANGE_OF_ONSET: {
mergeAgeRangeOfOnset(other.getAgeRangeOfOnset());
break;
}
case CLASS_OF_ONSET: {
mergeClassOfOnset(other.getClassOfOnset());
break;
}
case ONSET_NOT_SET: {
break;
}
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.core.Disease parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.core.Disease) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private int onsetCase_ = 0;
private java.lang.Object onset_;
public OnsetCase
getOnsetCase() {
return OnsetCase.forNumber(
onsetCase_);
}
public Builder clearOnset() {
onsetCase_ = 0;
onset_ = null;
onChanged();
return this;
}
private int bitField0_;
private org.phenopackets.schema.v1.core.OntologyClass term_;
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder> termBuilder_;
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public boolean hasTerm() {
return termBuilder_ != null || term_ != null;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public org.phenopackets.schema.v1.core.OntologyClass getTerm() {
if (termBuilder_ == null) {
return term_ == null ? org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : term_;
} else {
return termBuilder_.getMessage();
}
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public Builder setTerm(org.phenopackets.schema.v1.core.OntologyClass value) {
if (termBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
term_ = value;
onChanged();
} else {
termBuilder_.setMessage(value);
}
return this;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public Builder setTerm(
org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (termBuilder_ == null) {
term_ = builderForValue.build();
onChanged();
} else {
termBuilder_.setMessage(builderForValue.build());
}
return this;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public Builder mergeTerm(org.phenopackets.schema.v1.core.OntologyClass value) {
if (termBuilder_ == null) {
if (term_ != null) {
term_ =
org.phenopackets.schema.v1.core.OntologyClass.newBuilder(term_).mergeFrom(value).buildPartial();
} else {
term_ = value;
}
onChanged();
} else {
termBuilder_.mergeFrom(value);
}
return this;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public Builder clearTerm() {
if (termBuilder_ == null) {
term_ = null;
onChanged();
} else {
term_ = null;
termBuilder_ = null;
}
return this;
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder getTermBuilder() {
onChanged();
return getTermFieldBuilder().getBuilder();
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTermOrBuilder() {
if (termBuilder_ != null) {
return termBuilder_.getMessageOrBuilder();
} else {
return term_ == null ?
org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : term_;
}
}
/**
*
* The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
*
*
* .org.phenopackets.schema.v1.core.OntologyClass term = 1;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>
getTermFieldBuilder() {
if (termBuilder_ == null) {
termBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>(
getTerm(),
getParentForChildren(),
isClean());
term_ = null;
}
return termBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Age, org.phenopackets.schema.v1.core.Age.Builder, org.phenopackets.schema.v1.core.AgeOrBuilder> ageOfOnsetBuilder_;
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public boolean hasAgeOfOnset() {
return onsetCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public org.phenopackets.schema.v1.core.Age getAgeOfOnset() {
if (ageOfOnsetBuilder_ == null) {
if (onsetCase_ == 2) {
return (org.phenopackets.schema.v1.core.Age) onset_;
}
return org.phenopackets.schema.v1.core.Age.getDefaultInstance();
} else {
if (onsetCase_ == 2) {
return ageOfOnsetBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.Age.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public Builder setAgeOfOnset(org.phenopackets.schema.v1.core.Age value) {
if (ageOfOnsetBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
onset_ = value;
onChanged();
} else {
ageOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public Builder setAgeOfOnset(
org.phenopackets.schema.v1.core.Age.Builder builderForValue) {
if (ageOfOnsetBuilder_ == null) {
onset_ = builderForValue.build();
onChanged();
} else {
ageOfOnsetBuilder_.setMessage(builderForValue.build());
}
onsetCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public Builder mergeAgeOfOnset(org.phenopackets.schema.v1.core.Age value) {
if (ageOfOnsetBuilder_ == null) {
if (onsetCase_ == 2 &&
onset_ != org.phenopackets.schema.v1.core.Age.getDefaultInstance()) {
onset_ = org.phenopackets.schema.v1.core.Age.newBuilder((org.phenopackets.schema.v1.core.Age) onset_)
.mergeFrom(value).buildPartial();
} else {
onset_ = value;
}
onChanged();
} else {
if (onsetCase_ == 2) {
ageOfOnsetBuilder_.mergeFrom(value);
}
ageOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public Builder clearAgeOfOnset() {
if (ageOfOnsetBuilder_ == null) {
if (onsetCase_ == 2) {
onsetCase_ = 0;
onset_ = null;
onChanged();
}
} else {
if (onsetCase_ == 2) {
onsetCase_ = 0;
onset_ = null;
}
ageOfOnsetBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public org.phenopackets.schema.v1.core.Age.Builder getAgeOfOnsetBuilder() {
return getAgeOfOnsetFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
public org.phenopackets.schema.v1.core.AgeOrBuilder getAgeOfOnsetOrBuilder() {
if ((onsetCase_ == 2) && (ageOfOnsetBuilder_ != null)) {
return ageOfOnsetBuilder_.getMessageOrBuilder();
} else {
if (onsetCase_ == 2) {
return (org.phenopackets.schema.v1.core.Age) onset_;
}
return org.phenopackets.schema.v1.core.Age.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Age, org.phenopackets.schema.v1.core.Age.Builder, org.phenopackets.schema.v1.core.AgeOrBuilder>
getAgeOfOnsetFieldBuilder() {
if (ageOfOnsetBuilder_ == null) {
if (!(onsetCase_ == 2)) {
onset_ = org.phenopackets.schema.v1.core.Age.getDefaultInstance();
}
ageOfOnsetBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Age, org.phenopackets.schema.v1.core.Age.Builder, org.phenopackets.schema.v1.core.AgeOrBuilder>(
(org.phenopackets.schema.v1.core.Age) onset_,
getParentForChildren(),
isClean());
onset_ = null;
}
onsetCase_ = 2;
onChanged();;
return ageOfOnsetBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.AgeRange, org.phenopackets.schema.v1.core.AgeRange.Builder, org.phenopackets.schema.v1.core.AgeRangeOrBuilder> ageRangeOfOnsetBuilder_;
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public boolean hasAgeRangeOfOnset() {
return onsetCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public org.phenopackets.schema.v1.core.AgeRange getAgeRangeOfOnset() {
if (ageRangeOfOnsetBuilder_ == null) {
if (onsetCase_ == 3) {
return (org.phenopackets.schema.v1.core.AgeRange) onset_;
}
return org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
} else {
if (onsetCase_ == 3) {
return ageRangeOfOnsetBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public Builder setAgeRangeOfOnset(org.phenopackets.schema.v1.core.AgeRange value) {
if (ageRangeOfOnsetBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
onset_ = value;
onChanged();
} else {
ageRangeOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public Builder setAgeRangeOfOnset(
org.phenopackets.schema.v1.core.AgeRange.Builder builderForValue) {
if (ageRangeOfOnsetBuilder_ == null) {
onset_ = builderForValue.build();
onChanged();
} else {
ageRangeOfOnsetBuilder_.setMessage(builderForValue.build());
}
onsetCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public Builder mergeAgeRangeOfOnset(org.phenopackets.schema.v1.core.AgeRange value) {
if (ageRangeOfOnsetBuilder_ == null) {
if (onsetCase_ == 3 &&
onset_ != org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance()) {
onset_ = org.phenopackets.schema.v1.core.AgeRange.newBuilder((org.phenopackets.schema.v1.core.AgeRange) onset_)
.mergeFrom(value).buildPartial();
} else {
onset_ = value;
}
onChanged();
} else {
if (onsetCase_ == 3) {
ageRangeOfOnsetBuilder_.mergeFrom(value);
}
ageRangeOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public Builder clearAgeRangeOfOnset() {
if (ageRangeOfOnsetBuilder_ == null) {
if (onsetCase_ == 3) {
onsetCase_ = 0;
onset_ = null;
onChanged();
}
} else {
if (onsetCase_ == 3) {
onsetCase_ = 0;
onset_ = null;
}
ageRangeOfOnsetBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public org.phenopackets.schema.v1.core.AgeRange.Builder getAgeRangeOfOnsetBuilder() {
return getAgeRangeOfOnsetFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
public org.phenopackets.schema.v1.core.AgeRangeOrBuilder getAgeRangeOfOnsetOrBuilder() {
if ((onsetCase_ == 3) && (ageRangeOfOnsetBuilder_ != null)) {
return ageRangeOfOnsetBuilder_.getMessageOrBuilder();
} else {
if (onsetCase_ == 3) {
return (org.phenopackets.schema.v1.core.AgeRange) onset_;
}
return org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.AgeRange, org.phenopackets.schema.v1.core.AgeRange.Builder, org.phenopackets.schema.v1.core.AgeRangeOrBuilder>
getAgeRangeOfOnsetFieldBuilder() {
if (ageRangeOfOnsetBuilder_ == null) {
if (!(onsetCase_ == 3)) {
onset_ = org.phenopackets.schema.v1.core.AgeRange.getDefaultInstance();
}
ageRangeOfOnsetBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.AgeRange, org.phenopackets.schema.v1.core.AgeRange.Builder, org.phenopackets.schema.v1.core.AgeRangeOrBuilder>(
(org.phenopackets.schema.v1.core.AgeRange) onset_,
getParentForChildren(),
isClean());
onset_ = null;
}
onsetCase_ = 3;
onChanged();;
return ageRangeOfOnsetBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder> classOfOnsetBuilder_;
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public boolean hasClassOfOnset() {
return onsetCase_ == 4;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public org.phenopackets.schema.v1.core.OntologyClass getClassOfOnset() {
if (classOfOnsetBuilder_ == null) {
if (onsetCase_ == 4) {
return (org.phenopackets.schema.v1.core.OntologyClass) onset_;
}
return org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
} else {
if (onsetCase_ == 4) {
return classOfOnsetBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public Builder setClassOfOnset(org.phenopackets.schema.v1.core.OntologyClass value) {
if (classOfOnsetBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
onset_ = value;
onChanged();
} else {
classOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public Builder setClassOfOnset(
org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (classOfOnsetBuilder_ == null) {
onset_ = builderForValue.build();
onChanged();
} else {
classOfOnsetBuilder_.setMessage(builderForValue.build());
}
onsetCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public Builder mergeClassOfOnset(org.phenopackets.schema.v1.core.OntologyClass value) {
if (classOfOnsetBuilder_ == null) {
if (onsetCase_ == 4 &&
onset_ != org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance()) {
onset_ = org.phenopackets.schema.v1.core.OntologyClass.newBuilder((org.phenopackets.schema.v1.core.OntologyClass) onset_)
.mergeFrom(value).buildPartial();
} else {
onset_ = value;
}
onChanged();
} else {
if (onsetCase_ == 4) {
classOfOnsetBuilder_.mergeFrom(value);
}
classOfOnsetBuilder_.setMessage(value);
}
onsetCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public Builder clearClassOfOnset() {
if (classOfOnsetBuilder_ == null) {
if (onsetCase_ == 4) {
onsetCase_ = 0;
onset_ = null;
onChanged();
}
} else {
if (onsetCase_ == 4) {
onsetCase_ = 0;
onset_ = null;
}
classOfOnsetBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder getClassOfOnsetBuilder() {
return getClassOfOnsetFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getClassOfOnsetOrBuilder() {
if ((onsetCase_ == 4) && (classOfOnsetBuilder_ != null)) {
return classOfOnsetBuilder_.getMessageOrBuilder();
} else {
if (onsetCase_ == 4) {
return (org.phenopackets.schema.v1.core.OntologyClass) onset_;
}
return org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>
getClassOfOnsetFieldBuilder() {
if (classOfOnsetBuilder_ == null) {
if (!(onsetCase_ == 4)) {
onset_ = org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance();
}
classOfOnsetBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>(
(org.phenopackets.schema.v1.core.OntologyClass) onset_,
getParentForChildren(),
isClean());
onset_ = null;
}
onsetCase_ = 4;
onChanged();;
return classOfOnsetBuilder_;
}
private java.util.List tumorStage_ =
java.util.Collections.emptyList();
private void ensureTumorStageIsMutable() {
if (!((bitField0_ & 0x00000001) != 0)) {
tumorStage_ = new java.util.ArrayList(tumorStage_);
bitField0_ |= 0x00000001;
}
}
private com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder> tumorStageBuilder_;
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public java.util.List getTumorStageList() {
if (tumorStageBuilder_ == null) {
return java.util.Collections.unmodifiableList(tumorStage_);
} else {
return tumorStageBuilder_.getMessageList();
}
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public int getTumorStageCount() {
if (tumorStageBuilder_ == null) {
return tumorStage_.size();
} else {
return tumorStageBuilder_.getCount();
}
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClass getTumorStage(int index) {
if (tumorStageBuilder_ == null) {
return tumorStage_.get(index);
} else {
return tumorStageBuilder_.getMessage(index);
}
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder setTumorStage(
int index, org.phenopackets.schema.v1.core.OntologyClass value) {
if (tumorStageBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureTumorStageIsMutable();
tumorStage_.set(index, value);
onChanged();
} else {
tumorStageBuilder_.setMessage(index, value);
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder setTumorStage(
int index, org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (tumorStageBuilder_ == null) {
ensureTumorStageIsMutable();
tumorStage_.set(index, builderForValue.build());
onChanged();
} else {
tumorStageBuilder_.setMessage(index, builderForValue.build());
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder addTumorStage(org.phenopackets.schema.v1.core.OntologyClass value) {
if (tumorStageBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureTumorStageIsMutable();
tumorStage_.add(value);
onChanged();
} else {
tumorStageBuilder_.addMessage(value);
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder addTumorStage(
int index, org.phenopackets.schema.v1.core.OntologyClass value) {
if (tumorStageBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureTumorStageIsMutable();
tumorStage_.add(index, value);
onChanged();
} else {
tumorStageBuilder_.addMessage(index, value);
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder addTumorStage(
org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (tumorStageBuilder_ == null) {
ensureTumorStageIsMutable();
tumorStage_.add(builderForValue.build());
onChanged();
} else {
tumorStageBuilder_.addMessage(builderForValue.build());
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder addTumorStage(
int index, org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (tumorStageBuilder_ == null) {
ensureTumorStageIsMutable();
tumorStage_.add(index, builderForValue.build());
onChanged();
} else {
tumorStageBuilder_.addMessage(index, builderForValue.build());
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder addAllTumorStage(
java.lang.Iterable values) {
if (tumorStageBuilder_ == null) {
ensureTumorStageIsMutable();
com.google.protobuf.AbstractMessageLite.Builder.addAll(
values, tumorStage_);
onChanged();
} else {
tumorStageBuilder_.addAllMessages(values);
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder clearTumorStage() {
if (tumorStageBuilder_ == null) {
tumorStage_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000001);
onChanged();
} else {
tumorStageBuilder_.clear();
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public Builder removeTumorStage(int index) {
if (tumorStageBuilder_ == null) {
ensureTumorStageIsMutable();
tumorStage_.remove(index);
onChanged();
} else {
tumorStageBuilder_.remove(index);
}
return this;
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder getTumorStageBuilder(
int index) {
return getTumorStageFieldBuilder().getBuilder(index);
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTumorStageOrBuilder(
int index) {
if (tumorStageBuilder_ == null) {
return tumorStage_.get(index); } else {
return tumorStageBuilder_.getMessageOrBuilder(index);
}
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public java.util.List
getTumorStageOrBuilderList() {
if (tumorStageBuilder_ != null) {
return tumorStageBuilder_.getMessageOrBuilderList();
} else {
return java.util.Collections.unmodifiableList(tumorStage_);
}
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder addTumorStageBuilder() {
return getTumorStageFieldBuilder().addBuilder(
org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance());
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder addTumorStageBuilder(
int index) {
return getTumorStageFieldBuilder().addBuilder(
index, org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance());
}
/**
*
* Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
* See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
* e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
*
*
* repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
*/
public java.util.List
getTumorStageBuilderList() {
return getTumorStageFieldBuilder().getBuilderList();
}
private com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>
getTumorStageFieldBuilder() {
if (tumorStageBuilder_ == null) {
tumorStageBuilder_ = new com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>(
tumorStage_,
((bitField0_ & 0x00000001) != 0),
getParentForChildren(),
isClean());
tumorStage_ = null;
}
return tumorStageBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.core.Disease)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Disease)
private static final org.phenopackets.schema.v1.core.Disease DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.core.Disease();
}
public static org.phenopackets.schema.v1.core.Disease getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Disease parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new Disease(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Disease getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}