org.phenopackets.schema.v1.core.DiseaseOrBuilder Maven / Gradle / Ivy

Show more of this group Show more artifacts with this name
Show all versions of phenopacket-schema Show documentation
A Protobuf schema for capturing clinical phenotypes
There is a newer version: 2.0.2
// Generated by the protocol buffer compiler.  DO NOT EDIT!
// source: base.proto

package org.phenopackets.schema.v1.core;

public interface DiseaseOrBuilder extends
    // @@protoc_insertion_point(interface_extends:org.phenopackets.schema.v1.core.Disease)
    com.google.protobuf.MessageOrBuilder {

  /**
   *    * The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
   * 
   *
   * .org.phenopackets.schema.v1.core.OntologyClass term = 1;
   */
  boolean hasTerm();
  /**
   *    * The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
   * 
   *
   * .org.phenopackets.schema.v1.core.OntologyClass term = 1;
   */
  org.phenopackets.schema.v1.core.OntologyClass getTerm();
  /**
   *    * The identifier of this disease e.g. MONDO:0007043, OMIM:101600, Orphanet:710, DOID:14705 (note these are all equivalent)
   * 
   *
   * .org.phenopackets.schema.v1.core.OntologyClass term = 1;
   */
  org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTermOrBuilder();

  /**
   * .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
   */
  boolean hasAgeOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
   */
  org.phenopackets.schema.v1.core.Age getAgeOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
   */
  org.phenopackets.schema.v1.core.AgeOrBuilder getAgeOfOnsetOrBuilder();

  /**
   * .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
   */
  boolean hasAgeRangeOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
   */
  org.phenopackets.schema.v1.core.AgeRange getAgeRangeOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
   */
  org.phenopackets.schema.v1.core.AgeRangeOrBuilder getAgeRangeOfOnsetOrBuilder();

  /**
   * .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
   */
  boolean hasClassOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
   */
  org.phenopackets.schema.v1.core.OntologyClass getClassOfOnset();
  /**
   * .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
   */
  org.phenopackets.schema.v1.core.OntologyClassOrBuilder getClassOfOnsetOrBuilder();

  /**
   *    * Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
   * See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
   * e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
   * 
   *
   * repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
   */
  java.util.List 
      getTumorStageList();
  /**
   *    * Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
   * See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
   * e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
   * 
   *
   * repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
   */
  org.phenopackets.schema.v1.core.OntologyClass getTumorStage(int index);
  /**
   *    * Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
   * See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
   * e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
   * 
   *
   * repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
   */
  int getTumorStageCount();
  /**
   *    * Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
   * See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
   * e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
   * 
   *
   * repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
   */
  java.util.List 
      getTumorStageOrBuilderList();
  /**
   *    * Cancer findings in the TNM system that is relevant to the diagnosis of cancer.
   * See https://www.cancer.gov/about-cancer/diagnosis-staging/staging
   * e.g. Child terms of NCIT:C48232 (Cancer TNM Finding)
   * 
   *
   * repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
   */
  org.phenopackets.schema.v1.core.OntologyClassOrBuilder getTumorStageOrBuilder(
      int index);

  public org.phenopackets.schema.v1.core.Disease.OnsetCase getOnsetCase();
}