org.phenopackets.schema.v1.core.HgvsAllele Maven / Gradle / Ivy
Go to download
Show more of this group Show more artifacts with this name
Show all versions of phenopacket-schema Show documentation
Show all versions of phenopacket-schema Show documentation
A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
package org.phenopackets.schema.v1.core;
/**
*
* A single HGVS allele.
* It is recommended that the string is validated using the VariantValidator - https://variantvalidator.org/
* See http://varnomen.hgvs.org/recommendations/DNA/variant/alleles/
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.HgvsAllele}
*/
public final class HgvsAllele extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.core.HgvsAllele)
HgvsAlleleOrBuilder {
private static final long serialVersionUID = 0L;
// Use HgvsAllele.newBuilder() to construct.
private HgvsAllele(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private HgvsAllele() {
id_ = "";
hgvs_ = "";
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new HgvsAllele();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private HgvsAllele(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
com.google.protobuf.UnknownFieldSet.Builder unknownFields =
com.google.protobuf.UnknownFieldSet.newBuilder();
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
java.lang.String s = input.readStringRequireUtf8();
id_ = s;
break;
}
case 18: {
java.lang.String s = input.readStringRequireUtf8();
hgvs_ = s;
break;
}
default: {
if (!parseUnknownField(
input, unknownFields, extensionRegistry, tag)) {
done = true;
}
break;
}
}
}
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(this);
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(
e).setUnfinishedMessage(this);
} finally {
this.unknownFields = unknownFields.build();
makeExtensionsImmutable();
}
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_HgvsAllele_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_HgvsAllele_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.HgvsAllele.class, org.phenopackets.schema.v1.core.HgvsAllele.Builder.class);
}
public static final int ID_FIELD_NUMBER = 1;
private volatile java.lang.Object id_;
/**
* string id = 1;
*/
public java.lang.String getId() {
java.lang.Object ref = id_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
id_ = s;
return s;
}
}
/**
* string id = 1;
*/
public com.google.protobuf.ByteString
getIdBytes() {
java.lang.Object ref = id_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
id_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int HGVS_FIELD_NUMBER = 2;
private volatile java.lang.Object hgvs_;
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public java.lang.String getHgvs() {
java.lang.Object ref = hgvs_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
hgvs_ = s;
return s;
}
}
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public com.google.protobuf.ByteString
getHgvsBytes() {
java.lang.Object ref = hgvs_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
hgvs_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (!getIdBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 1, id_);
}
if (!getHgvsBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 2, hgvs_);
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (!getIdBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(1, id_);
}
if (!getHgvsBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(2, hgvs_);
}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.core.HgvsAllele)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.core.HgvsAllele other = (org.phenopackets.schema.v1.core.HgvsAllele) obj;
if (!getId()
.equals(other.getId())) return false;
if (!getHgvs()
.equals(other.getHgvs())) return false;
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
hash = (37 * hash) + ID_FIELD_NUMBER;
hash = (53 * hash) + getId().hashCode();
hash = (37 * hash) + HGVS_FIELD_NUMBER;
hash = (53 * hash) + getHgvs().hashCode();
hash = (29 * hash) + unknownFields.hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.HgvsAllele parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.core.HgvsAllele prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
*
* A single HGVS allele.
* It is recommended that the string is validated using the VariantValidator - https://variantvalidator.org/
* See http://varnomen.hgvs.org/recommendations/DNA/variant/alleles/
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.HgvsAllele}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.core.HgvsAllele)
org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_HgvsAllele_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_HgvsAllele_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.HgvsAllele.class, org.phenopackets.schema.v1.core.HgvsAllele.Builder.class);
}
// Construct using org.phenopackets.schema.v1.core.HgvsAllele.newBuilder()
private Builder() {
maybeForceBuilderInitialization();
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
maybeForceBuilderInitialization();
}
private void maybeForceBuilderInitialization() {
if (com.google.protobuf.GeneratedMessageV3
.alwaysUseFieldBuilders) {
}
}
@java.lang.Override
public Builder clear() {
super.clear();
id_ = "";
hgvs_ = "";
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_HgvsAllele_descriptor;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.HgvsAllele getDefaultInstanceForType() {
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.core.HgvsAllele build() {
org.phenopackets.schema.v1.core.HgvsAllele result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.HgvsAllele buildPartial() {
org.phenopackets.schema.v1.core.HgvsAllele result = new org.phenopackets.schema.v1.core.HgvsAllele(this);
result.id_ = id_;
result.hgvs_ = hgvs_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.core.HgvsAllele) {
return mergeFrom((org.phenopackets.schema.v1.core.HgvsAllele)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.phenopackets.schema.v1.core.HgvsAllele other) {
if (other == org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance()) return this;
if (!other.getId().isEmpty()) {
id_ = other.id_;
onChanged();
}
if (!other.getHgvs().isEmpty()) {
hgvs_ = other.hgvs_;
onChanged();
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.core.HgvsAllele parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.core.HgvsAllele) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private java.lang.Object id_ = "";
/**
* string id = 1;
*/
public java.lang.String getId() {
java.lang.Object ref = id_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
id_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string id = 1;
*/
public com.google.protobuf.ByteString
getIdBytes() {
java.lang.Object ref = id_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
id_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string id = 1;
*/
public Builder setId(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
id_ = value;
onChanged();
return this;
}
/**
* string id = 1;
*/
public Builder clearId() {
id_ = getDefaultInstance().getId();
onChanged();
return this;
}
/**
* string id = 1;
*/
public Builder setIdBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
id_ = value;
onChanged();
return this;
}
private java.lang.Object hgvs_ = "";
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public java.lang.String getHgvs() {
java.lang.Object ref = hgvs_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
hgvs_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public com.google.protobuf.ByteString
getHgvsBytes() {
java.lang.Object ref = hgvs_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
hgvs_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public Builder setHgvs(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
hgvs_ = value;
onChanged();
return this;
}
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public Builder clearHgvs() {
hgvs_ = getDefaultInstance().getHgvs();
onChanged();
return this;
}
/**
*
* e.g., NM_000226.3:c.470T>G
*
*
* string hgvs = 2;
*/
public Builder setHgvsBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
hgvs_ = value;
onChanged();
return this;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.core.HgvsAllele)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.HgvsAllele)
private static final org.phenopackets.schema.v1.core.HgvsAllele DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.core.HgvsAllele();
}
public static org.phenopackets.schema.v1.core.HgvsAllele getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public HgvsAllele parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new HgvsAllele(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.HgvsAllele getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}