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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
package org.phenopackets.schema.v1.core;
/**
*
* https://software.broadinstitute.org/gatk/documentation/article?id=11016
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Pedigree}
*/
public final class Pedigree extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.core.Pedigree)
PedigreeOrBuilder {
private static final long serialVersionUID = 0L;
// Use Pedigree.newBuilder() to construct.
private Pedigree(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Pedigree() {
persons_ = java.util.Collections.emptyList();
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Pedigree();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private Pedigree(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
int mutable_bitField0_ = 0;
com.google.protobuf.UnknownFieldSet.Builder unknownFields =
com.google.protobuf.UnknownFieldSet.newBuilder();
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
if (!((mutable_bitField0_ & 0x00000001) != 0)) {
persons_ = new java.util.ArrayList();
mutable_bitField0_ |= 0x00000001;
}
persons_.add(
input.readMessage(org.phenopackets.schema.v1.core.Pedigree.Person.parser(), extensionRegistry));
break;
}
default: {
if (!parseUnknownField(
input, unknownFields, extensionRegistry, tag)) {
done = true;
}
break;
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}
}
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(this);
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(
e).setUnfinishedMessage(this);
} finally {
if (((mutable_bitField0_ & 0x00000001) != 0)) {
persons_ = java.util.Collections.unmodifiableList(persons_);
}
this.unknownFields = unknownFields.build();
makeExtensionsImmutable();
}
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.Pedigree.class, org.phenopackets.schema.v1.core.Pedigree.Builder.class);
}
public interface PersonOrBuilder extends
// @@protoc_insertion_point(interface_extends:org.phenopackets.schema.v1.core.Pedigree.Person)
com.google.protobuf.MessageOrBuilder {
/**
* string family_id = 1;
*/
java.lang.String getFamilyId();
/**
* string family_id = 1;
*/
com.google.protobuf.ByteString
getFamilyIdBytes();
/**
* string individual_id = 2;
*/
java.lang.String getIndividualId();
/**
* string individual_id = 2;
*/
com.google.protobuf.ByteString
getIndividualIdBytes();
/**
* string paternal_id = 3;
*/
java.lang.String getPaternalId();
/**
* string paternal_id = 3;
*/
com.google.protobuf.ByteString
getPaternalIdBytes();
/**
* string maternal_id = 4;
*/
java.lang.String getMaternalId();
/**
* string maternal_id = 4;
*/
com.google.protobuf.ByteString
getMaternalIdBytes();
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
int getSexValue();
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
org.phenopackets.schema.v1.core.Sex getSex();
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
int getAffectedStatusValue();
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus getAffectedStatus();
}
/**
* Protobuf type {@code org.phenopackets.schema.v1.core.Pedigree.Person}
*/
public static final class Person extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.core.Pedigree.Person)
PersonOrBuilder {
private static final long serialVersionUID = 0L;
// Use Person.newBuilder() to construct.
private Person(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Person() {
familyId_ = "";
individualId_ = "";
paternalId_ = "";
maternalId_ = "";
sex_ = 0;
affectedStatus_ = 0;
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Person();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private Person(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
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int tag = input.readTag();
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case 10: {
java.lang.String s = input.readStringRequireUtf8();
familyId_ = s;
break;
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case 18: {
java.lang.String s = input.readStringRequireUtf8();
individualId_ = s;
break;
}
case 26: {
java.lang.String s = input.readStringRequireUtf8();
paternalId_ = s;
break;
}
case 34: {
java.lang.String s = input.readStringRequireUtf8();
maternalId_ = s;
break;
}
case 40: {
int rawValue = input.readEnum();
sex_ = rawValue;
break;
}
case 48: {
int rawValue = input.readEnum();
affectedStatus_ = rawValue;
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throw e.setUnfinishedMessage(this);
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throw new com.google.protobuf.InvalidProtocolBufferException(
e).setUnfinishedMessage(this);
} finally {
this.unknownFields = unknownFields.build();
makeExtensionsImmutable();
}
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_Person_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_Person_fieldAccessorTable
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org.phenopackets.schema.v1.core.Pedigree.Person.class, org.phenopackets.schema.v1.core.Pedigree.Person.Builder.class);
}
/**
* Protobuf enum {@code org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus}
*/
public enum AffectedStatus
implements com.google.protobuf.ProtocolMessageEnum {
/**
* MISSING = 0;
*/
MISSING(0),
/**
* UNAFFECTED = 1;
*/
UNAFFECTED(1),
/**
* AFFECTED = 2;
*/
AFFECTED(2),
UNRECOGNIZED(-1),
;
/**
* MISSING = 0;
*/
public static final int MISSING_VALUE = 0;
/**
* UNAFFECTED = 1;
*/
public static final int UNAFFECTED_VALUE = 1;
/**
* AFFECTED = 2;
*/
public static final int AFFECTED_VALUE = 2;
public final int getNumber() {
if (this == UNRECOGNIZED) {
throw new java.lang.IllegalArgumentException(
"Can't get the number of an unknown enum value.");
}
return value;
}
/**
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static AffectedStatus valueOf(int value) {
return forNumber(value);
}
public static AffectedStatus forNumber(int value) {
switch (value) {
case 0: return MISSING;
case 1: return UNAFFECTED;
case 2: return AFFECTED;
default: return null;
}
}
public static com.google.protobuf.Internal.EnumLiteMap
internalGetValueMap() {
return internalValueMap;
}
private static final com.google.protobuf.Internal.EnumLiteMap<
AffectedStatus> internalValueMap =
new com.google.protobuf.Internal.EnumLiteMap() {
public AffectedStatus findValueByNumber(int number) {
return AffectedStatus.forNumber(number);
}
};
public final com.google.protobuf.Descriptors.EnumValueDescriptor
getValueDescriptor() {
return getDescriptor().getValues().get(ordinal());
}
public final com.google.protobuf.Descriptors.EnumDescriptor
getDescriptorForType() {
return getDescriptor();
}
public static final com.google.protobuf.Descriptors.EnumDescriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Pedigree.Person.getDescriptor().getEnumTypes().get(0);
}
private static final AffectedStatus[] VALUES = values();
public static AffectedStatus valueOf(
com.google.protobuf.Descriptors.EnumValueDescriptor desc) {
if (desc.getType() != getDescriptor()) {
throw new java.lang.IllegalArgumentException(
"EnumValueDescriptor is not for this type.");
}
if (desc.getIndex() == -1) {
return UNRECOGNIZED;
}
return VALUES[desc.getIndex()];
}
private final int value;
private AffectedStatus(int value) {
this.value = value;
}
// @@protoc_insertion_point(enum_scope:org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus)
}
public static final int FAMILY_ID_FIELD_NUMBER = 1;
private volatile java.lang.Object familyId_;
/**
* string family_id = 1;
*/
public java.lang.String getFamilyId() {
java.lang.Object ref = familyId_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
familyId_ = s;
return s;
}
}
/**
* string family_id = 1;
*/
public com.google.protobuf.ByteString
getFamilyIdBytes() {
java.lang.Object ref = familyId_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
familyId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int INDIVIDUAL_ID_FIELD_NUMBER = 2;
private volatile java.lang.Object individualId_;
/**
* string individual_id = 2;
*/
public java.lang.String getIndividualId() {
java.lang.Object ref = individualId_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
individualId_ = s;
return s;
}
}
/**
* string individual_id = 2;
*/
public com.google.protobuf.ByteString
getIndividualIdBytes() {
java.lang.Object ref = individualId_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
individualId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int PATERNAL_ID_FIELD_NUMBER = 3;
private volatile java.lang.Object paternalId_;
/**
* string paternal_id = 3;
*/
public java.lang.String getPaternalId() {
java.lang.Object ref = paternalId_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
paternalId_ = s;
return s;
}
}
/**
* string paternal_id = 3;
*/
public com.google.protobuf.ByteString
getPaternalIdBytes() {
java.lang.Object ref = paternalId_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
paternalId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int MATERNAL_ID_FIELD_NUMBER = 4;
private volatile java.lang.Object maternalId_;
/**
* string maternal_id = 4;
*/
public java.lang.String getMaternalId() {
java.lang.Object ref = maternalId_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
maternalId_ = s;
return s;
}
}
/**
* string maternal_id = 4;
*/
public com.google.protobuf.ByteString
getMaternalIdBytes() {
java.lang.Object ref = maternalId_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
maternalId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int SEX_FIELD_NUMBER = 5;
private int sex_;
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public int getSexValue() {
return sex_;
}
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public org.phenopackets.schema.v1.core.Sex getSex() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.core.Sex result = org.phenopackets.schema.v1.core.Sex.valueOf(sex_);
return result == null ? org.phenopackets.schema.v1.core.Sex.UNRECOGNIZED : result;
}
public static final int AFFECTED_STATUS_FIELD_NUMBER = 6;
private int affectedStatus_;
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public int getAffectedStatusValue() {
return affectedStatus_;
}
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus getAffectedStatus() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus result = org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.valueOf(affectedStatus_);
return result == null ? org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.UNRECOGNIZED : result;
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (!getFamilyIdBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 1, familyId_);
}
if (!getIndividualIdBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 2, individualId_);
}
if (!getPaternalIdBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 3, paternalId_);
}
if (!getMaternalIdBytes().isEmpty()) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 4, maternalId_);
}
if (sex_ != org.phenopackets.schema.v1.core.Sex.UNKNOWN_SEX.getNumber()) {
output.writeEnum(5, sex_);
}
if (affectedStatus_ != org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.MISSING.getNumber()) {
output.writeEnum(6, affectedStatus_);
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (!getFamilyIdBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(1, familyId_);
}
if (!getIndividualIdBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(2, individualId_);
}
if (!getPaternalIdBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(3, paternalId_);
}
if (!getMaternalIdBytes().isEmpty()) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(4, maternalId_);
}
if (sex_ != org.phenopackets.schema.v1.core.Sex.UNKNOWN_SEX.getNumber()) {
size += com.google.protobuf.CodedOutputStream
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}
if (affectedStatus_ != org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.MISSING.getNumber()) {
size += com.google.protobuf.CodedOutputStream
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}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.core.Pedigree.Person)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.core.Pedigree.Person other = (org.phenopackets.schema.v1.core.Pedigree.Person) obj;
if (!getFamilyId()
.equals(other.getFamilyId())) return false;
if (!getIndividualId()
.equals(other.getIndividualId())) return false;
if (!getPaternalId()
.equals(other.getPaternalId())) return false;
if (!getMaternalId()
.equals(other.getMaternalId())) return false;
if (sex_ != other.sex_) return false;
if (affectedStatus_ != other.affectedStatus_) return false;
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
hash = (37 * hash) + FAMILY_ID_FIELD_NUMBER;
hash = (53 * hash) + getFamilyId().hashCode();
hash = (37 * hash) + INDIVIDUAL_ID_FIELD_NUMBER;
hash = (53 * hash) + getIndividualId().hashCode();
hash = (37 * hash) + PATERNAL_ID_FIELD_NUMBER;
hash = (53 * hash) + getPaternalId().hashCode();
hash = (37 * hash) + MATERNAL_ID_FIELD_NUMBER;
hash = (53 * hash) + getMaternalId().hashCode();
hash = (37 * hash) + SEX_FIELD_NUMBER;
hash = (53 * hash) + sex_;
hash = (37 * hash) + AFFECTED_STATUS_FIELD_NUMBER;
hash = (53 * hash) + affectedStatus_;
hash = (29 * hash) + unknownFields.hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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}
public static org.phenopackets.schema.v1.core.Pedigree.Person parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.core.Pedigree.Person prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code org.phenopackets.schema.v1.core.Pedigree.Person}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.core.Pedigree.Person)
org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_Person_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
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org.phenopackets.schema.v1.core.Pedigree.Person.class, org.phenopackets.schema.v1.core.Pedigree.Person.Builder.class);
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private Builder() {
maybeForceBuilderInitialization();
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private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
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maybeForceBuilderInitialization();
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@java.lang.Override
public Builder clear() {
super.clear();
familyId_ = "";
individualId_ = "";
paternalId_ = "";
maternalId_ = "";
sex_ = 0;
affectedStatus_ = 0;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_Person_descriptor;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree.Person getDefaultInstanceForType() {
return org.phenopackets.schema.v1.core.Pedigree.Person.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree.Person build() {
org.phenopackets.schema.v1.core.Pedigree.Person result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree.Person buildPartial() {
org.phenopackets.schema.v1.core.Pedigree.Person result = new org.phenopackets.schema.v1.core.Pedigree.Person(this);
result.familyId_ = familyId_;
result.individualId_ = individualId_;
result.paternalId_ = paternalId_;
result.maternalId_ = maternalId_;
result.sex_ = sex_;
result.affectedStatus_ = affectedStatus_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.core.Pedigree.Person) {
return mergeFrom((org.phenopackets.schema.v1.core.Pedigree.Person)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.phenopackets.schema.v1.core.Pedigree.Person other) {
if (other == org.phenopackets.schema.v1.core.Pedigree.Person.getDefaultInstance()) return this;
if (!other.getFamilyId().isEmpty()) {
familyId_ = other.familyId_;
onChanged();
}
if (!other.getIndividualId().isEmpty()) {
individualId_ = other.individualId_;
onChanged();
}
if (!other.getPaternalId().isEmpty()) {
paternalId_ = other.paternalId_;
onChanged();
}
if (!other.getMaternalId().isEmpty()) {
maternalId_ = other.maternalId_;
onChanged();
}
if (other.sex_ != 0) {
setSexValue(other.getSexValue());
}
if (other.affectedStatus_ != 0) {
setAffectedStatusValue(other.getAffectedStatusValue());
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.core.Pedigree.Person parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.core.Pedigree.Person) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private java.lang.Object familyId_ = "";
/**
* string family_id = 1;
*/
public java.lang.String getFamilyId() {
java.lang.Object ref = familyId_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
familyId_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string family_id = 1;
*/
public com.google.protobuf.ByteString
getFamilyIdBytes() {
java.lang.Object ref = familyId_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
familyId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string family_id = 1;
*/
public Builder setFamilyId(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
familyId_ = value;
onChanged();
return this;
}
/**
* string family_id = 1;
*/
public Builder clearFamilyId() {
familyId_ = getDefaultInstance().getFamilyId();
onChanged();
return this;
}
/**
* string family_id = 1;
*/
public Builder setFamilyIdBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
familyId_ = value;
onChanged();
return this;
}
private java.lang.Object individualId_ = "";
/**
* string individual_id = 2;
*/
public java.lang.String getIndividualId() {
java.lang.Object ref = individualId_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
individualId_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string individual_id = 2;
*/
public com.google.protobuf.ByteString
getIndividualIdBytes() {
java.lang.Object ref = individualId_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
individualId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string individual_id = 2;
*/
public Builder setIndividualId(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
individualId_ = value;
onChanged();
return this;
}
/**
* string individual_id = 2;
*/
public Builder clearIndividualId() {
individualId_ = getDefaultInstance().getIndividualId();
onChanged();
return this;
}
/**
* string individual_id = 2;
*/
public Builder setIndividualIdBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
individualId_ = value;
onChanged();
return this;
}
private java.lang.Object paternalId_ = "";
/**
* string paternal_id = 3;
*/
public java.lang.String getPaternalId() {
java.lang.Object ref = paternalId_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
paternalId_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string paternal_id = 3;
*/
public com.google.protobuf.ByteString
getPaternalIdBytes() {
java.lang.Object ref = paternalId_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
paternalId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string paternal_id = 3;
*/
public Builder setPaternalId(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
paternalId_ = value;
onChanged();
return this;
}
/**
* string paternal_id = 3;
*/
public Builder clearPaternalId() {
paternalId_ = getDefaultInstance().getPaternalId();
onChanged();
return this;
}
/**
* string paternal_id = 3;
*/
public Builder setPaternalIdBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
paternalId_ = value;
onChanged();
return this;
}
private java.lang.Object maternalId_ = "";
/**
* string maternal_id = 4;
*/
public java.lang.String getMaternalId() {
java.lang.Object ref = maternalId_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
maternalId_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string maternal_id = 4;
*/
public com.google.protobuf.ByteString
getMaternalIdBytes() {
java.lang.Object ref = maternalId_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
maternalId_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string maternal_id = 4;
*/
public Builder setMaternalId(
java.lang.String value) {
if (value == null) {
throw new NullPointerException();
}
maternalId_ = value;
onChanged();
return this;
}
/**
* string maternal_id = 4;
*/
public Builder clearMaternalId() {
maternalId_ = getDefaultInstance().getMaternalId();
onChanged();
return this;
}
/**
* string maternal_id = 4;
*/
public Builder setMaternalIdBytes(
com.google.protobuf.ByteString value) {
if (value == null) {
throw new NullPointerException();
}
checkByteStringIsUtf8(value);
maternalId_ = value;
onChanged();
return this;
}
private int sex_ = 0;
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public int getSexValue() {
return sex_;
}
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public Builder setSexValue(int value) {
sex_ = value;
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public org.phenopackets.schema.v1.core.Sex getSex() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.core.Sex result = org.phenopackets.schema.v1.core.Sex.valueOf(sex_);
return result == null ? org.phenopackets.schema.v1.core.Sex.UNRECOGNIZED : result;
}
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public Builder setSex(org.phenopackets.schema.v1.core.Sex value) {
if (value == null) {
throw new NullPointerException();
}
sex_ = value.getNumber();
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.core.Sex sex = 5;
*/
public Builder clearSex() {
sex_ = 0;
onChanged();
return this;
}
private int affectedStatus_ = 0;
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public int getAffectedStatusValue() {
return affectedStatus_;
}
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public Builder setAffectedStatusValue(int value) {
affectedStatus_ = value;
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus getAffectedStatus() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus result = org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.valueOf(affectedStatus_);
return result == null ? org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus.UNRECOGNIZED : result;
}
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public Builder setAffectedStatus(org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus value) {
if (value == null) {
throw new NullPointerException();
}
affectedStatus_ = value.getNumber();
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
*/
public Builder clearAffectedStatus() {
affectedStatus_ = 0;
onChanged();
return this;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.core.Pedigree.Person)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Pedigree.Person)
private static final org.phenopackets.schema.v1.core.Pedigree.Person DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.core.Pedigree.Person();
}
public static org.phenopackets.schema.v1.core.Pedigree.Person getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Person parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new Person(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree.Person getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
public static final int PERSONS_FIELD_NUMBER = 1;
private java.util.List persons_;
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public java.util.List getPersonsList() {
return persons_;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public java.util.List
getPersonsOrBuilderList() {
return persons_;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public int getPersonsCount() {
return persons_.size();
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person getPersons(int index) {
return persons_.get(index);
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder getPersonsOrBuilder(
int index) {
return persons_.get(index);
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
for (int i = 0; i < persons_.size(); i++) {
output.writeMessage(1, persons_.get(i));
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
for (int i = 0; i < persons_.size(); i++) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(1, persons_.get(i));
}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.core.Pedigree)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.core.Pedigree other = (org.phenopackets.schema.v1.core.Pedigree) obj;
if (!getPersonsList()
.equals(other.getPersonsList())) return false;
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
if (getPersonsCount() > 0) {
hash = (37 * hash) + PERSONS_FIELD_NUMBER;
hash = (53 * hash) + getPersonsList().hashCode();
}
hash = (29 * hash) + unknownFields.hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Pedigree parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Pedigree parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.core.Pedigree prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
*
* https://software.broadinstitute.org/gatk/documentation/article?id=11016
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Pedigree}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.core.Pedigree)
org.phenopackets.schema.v1.core.PedigreeOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.Pedigree.class, org.phenopackets.schema.v1.core.Pedigree.Builder.class);
}
// Construct using org.phenopackets.schema.v1.core.Pedigree.newBuilder()
private Builder() {
maybeForceBuilderInitialization();
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
maybeForceBuilderInitialization();
}
private void maybeForceBuilderInitialization() {
if (com.google.protobuf.GeneratedMessageV3
.alwaysUseFieldBuilders) {
getPersonsFieldBuilder();
}
}
@java.lang.Override
public Builder clear() {
super.clear();
if (personsBuilder_ == null) {
persons_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000001);
} else {
personsBuilder_.clear();
}
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Pedigree_descriptor;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree getDefaultInstanceForType() {
return org.phenopackets.schema.v1.core.Pedigree.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree build() {
org.phenopackets.schema.v1.core.Pedigree result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree buildPartial() {
org.phenopackets.schema.v1.core.Pedigree result = new org.phenopackets.schema.v1.core.Pedigree(this);
int from_bitField0_ = bitField0_;
if (personsBuilder_ == null) {
if (((bitField0_ & 0x00000001) != 0)) {
persons_ = java.util.Collections.unmodifiableList(persons_);
bitField0_ = (bitField0_ & ~0x00000001);
}
result.persons_ = persons_;
} else {
result.persons_ = personsBuilder_.build();
}
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
public Builder clearOneof(
com.google.protobuf.Descriptors.OneofDescriptor oneof) {
return super.clearOneof(oneof);
}
@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
}
@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.core.Pedigree) {
return mergeFrom((org.phenopackets.schema.v1.core.Pedigree)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.phenopackets.schema.v1.core.Pedigree other) {
if (other == org.phenopackets.schema.v1.core.Pedigree.getDefaultInstance()) return this;
if (personsBuilder_ == null) {
if (!other.persons_.isEmpty()) {
if (persons_.isEmpty()) {
persons_ = other.persons_;
bitField0_ = (bitField0_ & ~0x00000001);
} else {
ensurePersonsIsMutable();
persons_.addAll(other.persons_);
}
onChanged();
}
} else {
if (!other.persons_.isEmpty()) {
if (personsBuilder_.isEmpty()) {
personsBuilder_.dispose();
personsBuilder_ = null;
persons_ = other.persons_;
bitField0_ = (bitField0_ & ~0x00000001);
personsBuilder_ =
com.google.protobuf.GeneratedMessageV3.alwaysUseFieldBuilders ?
getPersonsFieldBuilder() : null;
} else {
personsBuilder_.addAllMessages(other.persons_);
}
}
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.core.Pedigree parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.core.Pedigree) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private int bitField0_;
private java.util.List persons_ =
java.util.Collections.emptyList();
private void ensurePersonsIsMutable() {
if (!((bitField0_ & 0x00000001) != 0)) {
persons_ = new java.util.ArrayList(persons_);
bitField0_ |= 0x00000001;
}
}
private com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.Pedigree.Person, org.phenopackets.schema.v1.core.Pedigree.Person.Builder, org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder> personsBuilder_;
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public java.util.List getPersonsList() {
if (personsBuilder_ == null) {
return java.util.Collections.unmodifiableList(persons_);
} else {
return personsBuilder_.getMessageList();
}
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public int getPersonsCount() {
if (personsBuilder_ == null) {
return persons_.size();
} else {
return personsBuilder_.getCount();
}
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person getPersons(int index) {
if (personsBuilder_ == null) {
return persons_.get(index);
} else {
return personsBuilder_.getMessage(index);
}
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder setPersons(
int index, org.phenopackets.schema.v1.core.Pedigree.Person value) {
if (personsBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensurePersonsIsMutable();
persons_.set(index, value);
onChanged();
} else {
personsBuilder_.setMessage(index, value);
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder setPersons(
int index, org.phenopackets.schema.v1.core.Pedigree.Person.Builder builderForValue) {
if (personsBuilder_ == null) {
ensurePersonsIsMutable();
persons_.set(index, builderForValue.build());
onChanged();
} else {
personsBuilder_.setMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder addPersons(org.phenopackets.schema.v1.core.Pedigree.Person value) {
if (personsBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensurePersonsIsMutable();
persons_.add(value);
onChanged();
} else {
personsBuilder_.addMessage(value);
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder addPersons(
int index, org.phenopackets.schema.v1.core.Pedigree.Person value) {
if (personsBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensurePersonsIsMutable();
persons_.add(index, value);
onChanged();
} else {
personsBuilder_.addMessage(index, value);
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder addPersons(
org.phenopackets.schema.v1.core.Pedigree.Person.Builder builderForValue) {
if (personsBuilder_ == null) {
ensurePersonsIsMutable();
persons_.add(builderForValue.build());
onChanged();
} else {
personsBuilder_.addMessage(builderForValue.build());
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder addPersons(
int index, org.phenopackets.schema.v1.core.Pedigree.Person.Builder builderForValue) {
if (personsBuilder_ == null) {
ensurePersonsIsMutable();
persons_.add(index, builderForValue.build());
onChanged();
} else {
personsBuilder_.addMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder addAllPersons(
java.lang.Iterable values) {
if (personsBuilder_ == null) {
ensurePersonsIsMutable();
com.google.protobuf.AbstractMessageLite.Builder.addAll(
values, persons_);
onChanged();
} else {
personsBuilder_.addAllMessages(values);
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder clearPersons() {
if (personsBuilder_ == null) {
persons_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000001);
onChanged();
} else {
personsBuilder_.clear();
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public Builder removePersons(int index) {
if (personsBuilder_ == null) {
ensurePersonsIsMutable();
persons_.remove(index);
onChanged();
} else {
personsBuilder_.remove(index);
}
return this;
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person.Builder getPersonsBuilder(
int index) {
return getPersonsFieldBuilder().getBuilder(index);
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder getPersonsOrBuilder(
int index) {
if (personsBuilder_ == null) {
return persons_.get(index); } else {
return personsBuilder_.getMessageOrBuilder(index);
}
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public java.util.List
getPersonsOrBuilderList() {
if (personsBuilder_ != null) {
return personsBuilder_.getMessageOrBuilderList();
} else {
return java.util.Collections.unmodifiableList(persons_);
}
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person.Builder addPersonsBuilder() {
return getPersonsFieldBuilder().addBuilder(
org.phenopackets.schema.v1.core.Pedigree.Person.getDefaultInstance());
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public org.phenopackets.schema.v1.core.Pedigree.Person.Builder addPersonsBuilder(
int index) {
return getPersonsFieldBuilder().addBuilder(
index, org.phenopackets.schema.v1.core.Pedigree.Person.getDefaultInstance());
}
/**
* repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
*/
public java.util.List
getPersonsBuilderList() {
return getPersonsFieldBuilder().getBuilderList();
}
private com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.Pedigree.Person, org.phenopackets.schema.v1.core.Pedigree.Person.Builder, org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder>
getPersonsFieldBuilder() {
if (personsBuilder_ == null) {
personsBuilder_ = new com.google.protobuf.RepeatedFieldBuilderV3<
org.phenopackets.schema.v1.core.Pedigree.Person, org.phenopackets.schema.v1.core.Pedigree.Person.Builder, org.phenopackets.schema.v1.core.Pedigree.PersonOrBuilder>(
persons_,
((bitField0_ & 0x00000001) != 0),
getParentForChildren(),
isClean());
persons_ = null;
}
return personsBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.core.Pedigree)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Pedigree)
private static final org.phenopackets.schema.v1.core.Pedigree DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.core.Pedigree();
}
public static org.phenopackets.schema.v1.core.Pedigree getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Pedigree parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new Pedigree(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Pedigree getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}