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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
package org.phenopackets.schema.v1.core;
/**
*
* A variant allele. Alleles can be listed using HGVS, VCF, SPDI or ISCN notation.
* SPDI format is the exchange standard used for ClinVar, dbSNP and soon the EVA
* Tools for interconversion between SPDI, HGVS and VCF exist at https://api.ncbi.nlm.nih.gov/variation/v0/
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Variant}
*/
public final class Variant extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.core.Variant)
VariantOrBuilder {
private static final long serialVersionUID = 0L;
// Use Variant.newBuilder() to construct.
private Variant(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Variant() {
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Variant();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private Variant(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
com.google.protobuf.UnknownFieldSet.Builder unknownFields =
com.google.protobuf.UnknownFieldSet.newBuilder();
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 18: {
org.phenopackets.schema.v1.core.HgvsAllele.Builder subBuilder = null;
if (alleleCase_ == 2) {
subBuilder = ((org.phenopackets.schema.v1.core.HgvsAllele) allele_).toBuilder();
}
allele_ =
input.readMessage(org.phenopackets.schema.v1.core.HgvsAllele.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.HgvsAllele) allele_);
allele_ = subBuilder.buildPartial();
}
alleleCase_ = 2;
break;
}
case 26: {
org.phenopackets.schema.v1.core.VcfAllele.Builder subBuilder = null;
if (alleleCase_ == 3) {
subBuilder = ((org.phenopackets.schema.v1.core.VcfAllele) allele_).toBuilder();
}
allele_ =
input.readMessage(org.phenopackets.schema.v1.core.VcfAllele.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.VcfAllele) allele_);
allele_ = subBuilder.buildPartial();
}
alleleCase_ = 3;
break;
}
case 34: {
org.phenopackets.schema.v1.core.SpdiAllele.Builder subBuilder = null;
if (alleleCase_ == 4) {
subBuilder = ((org.phenopackets.schema.v1.core.SpdiAllele) allele_).toBuilder();
}
allele_ =
input.readMessage(org.phenopackets.schema.v1.core.SpdiAllele.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.SpdiAllele) allele_);
allele_ = subBuilder.buildPartial();
}
alleleCase_ = 4;
break;
}
case 42: {
org.phenopackets.schema.v1.core.IscnAllele.Builder subBuilder = null;
if (alleleCase_ == 5) {
subBuilder = ((org.phenopackets.schema.v1.core.IscnAllele) allele_).toBuilder();
}
allele_ =
input.readMessage(org.phenopackets.schema.v1.core.IscnAllele.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom((org.phenopackets.schema.v1.core.IscnAllele) allele_);
allele_ = subBuilder.buildPartial();
}
alleleCase_ = 5;
break;
}
case 50: {
org.phenopackets.schema.v1.core.OntologyClass.Builder subBuilder = null;
if (zygosity_ != null) {
subBuilder = zygosity_.toBuilder();
}
zygosity_ = input.readMessage(org.phenopackets.schema.v1.core.OntologyClass.parser(), extensionRegistry);
if (subBuilder != null) {
subBuilder.mergeFrom(zygosity_);
zygosity_ = subBuilder.buildPartial();
}
break;
}
default: {
if (!parseUnknownField(
input, unknownFields, extensionRegistry, tag)) {
done = true;
}
break;
}
}
}
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(this);
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(
e).setUnfinishedMessage(this);
} finally {
this.unknownFields = unknownFields.build();
makeExtensionsImmutable();
}
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Variant_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Variant_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.core.Variant.class, org.phenopackets.schema.v1.core.Variant.Builder.class);
}
private int alleleCase_ = 0;
private java.lang.Object allele_;
public enum AlleleCase
implements com.google.protobuf.Internal.EnumLite {
HGVS_ALLELE(2),
VCF_ALLELE(3),
SPDI_ALLELE(4),
ISCN_ALLELE(5),
ALLELE_NOT_SET(0);
private final int value;
private AlleleCase(int value) {
this.value = value;
}
/**
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static AlleleCase valueOf(int value) {
return forNumber(value);
}
public static AlleleCase forNumber(int value) {
switch (value) {
case 2: return HGVS_ALLELE;
case 3: return VCF_ALLELE;
case 4: return SPDI_ALLELE;
case 5: return ISCN_ALLELE;
case 0: return ALLELE_NOT_SET;
default: return null;
}
}
public int getNumber() {
return this.value;
}
};
public AlleleCase
getAlleleCase() {
return AlleleCase.forNumber(
alleleCase_);
}
public static final int HGVS_ALLELE_FIELD_NUMBER = 2;
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public boolean hasHgvsAllele() {
return alleleCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public org.phenopackets.schema.v1.core.HgvsAllele getHgvsAllele() {
if (alleleCase_ == 2) {
return (org.phenopackets.schema.v1.core.HgvsAllele) allele_;
}
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder getHgvsAlleleOrBuilder() {
if (alleleCase_ == 2) {
return (org.phenopackets.schema.v1.core.HgvsAllele) allele_;
}
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
public static final int VCF_ALLELE_FIELD_NUMBER = 3;
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public boolean hasVcfAllele() {
return alleleCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public org.phenopackets.schema.v1.core.VcfAllele getVcfAllele() {
if (alleleCase_ == 3) {
return (org.phenopackets.schema.v1.core.VcfAllele) allele_;
}
return org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public org.phenopackets.schema.v1.core.VcfAlleleOrBuilder getVcfAlleleOrBuilder() {
if (alleleCase_ == 3) {
return (org.phenopackets.schema.v1.core.VcfAllele) allele_;
}
return org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
}
public static final int SPDI_ALLELE_FIELD_NUMBER = 4;
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public boolean hasSpdiAllele() {
return alleleCase_ == 4;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public org.phenopackets.schema.v1.core.SpdiAllele getSpdiAllele() {
if (alleleCase_ == 4) {
return (org.phenopackets.schema.v1.core.SpdiAllele) allele_;
}
return org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public org.phenopackets.schema.v1.core.SpdiAlleleOrBuilder getSpdiAlleleOrBuilder() {
if (alleleCase_ == 4) {
return (org.phenopackets.schema.v1.core.SpdiAllele) allele_;
}
return org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
}
public static final int ISCN_ALLELE_FIELD_NUMBER = 5;
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public boolean hasIscnAllele() {
return alleleCase_ == 5;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public org.phenopackets.schema.v1.core.IscnAllele getIscnAllele() {
if (alleleCase_ == 5) {
return (org.phenopackets.schema.v1.core.IscnAllele) allele_;
}
return org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public org.phenopackets.schema.v1.core.IscnAlleleOrBuilder getIscnAlleleOrBuilder() {
if (alleleCase_ == 5) {
return (org.phenopackets.schema.v1.core.IscnAllele) allele_;
}
return org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
}
public static final int ZYGOSITY_FIELD_NUMBER = 6;
private org.phenopackets.schema.v1.core.OntologyClass zygosity_;
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public boolean hasZygosity() {
return zygosity_ != null;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public org.phenopackets.schema.v1.core.OntologyClass getZygosity() {
return zygosity_ == null ? org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : zygosity_;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getZygosityOrBuilder() {
return getZygosity();
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (alleleCase_ == 2) {
output.writeMessage(2, (org.phenopackets.schema.v1.core.HgvsAllele) allele_);
}
if (alleleCase_ == 3) {
output.writeMessage(3, (org.phenopackets.schema.v1.core.VcfAllele) allele_);
}
if (alleleCase_ == 4) {
output.writeMessage(4, (org.phenopackets.schema.v1.core.SpdiAllele) allele_);
}
if (alleleCase_ == 5) {
output.writeMessage(5, (org.phenopackets.schema.v1.core.IscnAllele) allele_);
}
if (zygosity_ != null) {
output.writeMessage(6, getZygosity());
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (alleleCase_ == 2) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(2, (org.phenopackets.schema.v1.core.HgvsAllele) allele_);
}
if (alleleCase_ == 3) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(3, (org.phenopackets.schema.v1.core.VcfAllele) allele_);
}
if (alleleCase_ == 4) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(4, (org.phenopackets.schema.v1.core.SpdiAllele) allele_);
}
if (alleleCase_ == 5) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(5, (org.phenopackets.schema.v1.core.IscnAllele) allele_);
}
if (zygosity_ != null) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(6, getZygosity());
}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.core.Variant)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.core.Variant other = (org.phenopackets.schema.v1.core.Variant) obj;
if (hasZygosity() != other.hasZygosity()) return false;
if (hasZygosity()) {
if (!getZygosity()
.equals(other.getZygosity())) return false;
}
if (!getAlleleCase().equals(other.getAlleleCase())) return false;
switch (alleleCase_) {
case 2:
if (!getHgvsAllele()
.equals(other.getHgvsAllele())) return false;
break;
case 3:
if (!getVcfAllele()
.equals(other.getVcfAllele())) return false;
break;
case 4:
if (!getSpdiAllele()
.equals(other.getSpdiAllele())) return false;
break;
case 5:
if (!getIscnAllele()
.equals(other.getIscnAllele())) return false;
break;
case 0:
default:
}
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
if (hasZygosity()) {
hash = (37 * hash) + ZYGOSITY_FIELD_NUMBER;
hash = (53 * hash) + getZygosity().hashCode();
}
switch (alleleCase_) {
case 2:
hash = (37 * hash) + HGVS_ALLELE_FIELD_NUMBER;
hash = (53 * hash) + getHgvsAllele().hashCode();
break;
case 3:
hash = (37 * hash) + VCF_ALLELE_FIELD_NUMBER;
hash = (53 * hash) + getVcfAllele().hashCode();
break;
case 4:
hash = (37 * hash) + SPDI_ALLELE_FIELD_NUMBER;
hash = (53 * hash) + getSpdiAllele().hashCode();
break;
case 5:
hash = (37 * hash) + ISCN_ALLELE_FIELD_NUMBER;
hash = (53 * hash) + getIscnAllele().hashCode();
break;
case 0:
default:
}
hash = (29 * hash) + unknownFields.hashCode();
memoizedHashCode = hash;
return hash;
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
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public static org.phenopackets.schema.v1.core.Variant parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.core.Variant parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Variant parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.core.Variant parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
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@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.core.Variant prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
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return this == DEFAULT_INSTANCE
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}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
*
* A variant allele. Alleles can be listed using HGVS, VCF, SPDI or ISCN notation.
* SPDI format is the exchange standard used for ClinVar, dbSNP and soon the EVA
* Tools for interconversion between SPDI, HGVS and VCF exist at https://api.ncbi.nlm.nih.gov/variation/v0/
*
*
* Protobuf type {@code org.phenopackets.schema.v1.core.Variant}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.core.Variant)
org.phenopackets.schema.v1.core.VariantOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.core.Base.internal_static_org_phenopackets_schema_v1_core_Variant_descriptor;
}
@java.lang.Override
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private Builder() {
maybeForceBuilderInitialization();
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private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
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maybeForceBuilderInitialization();
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private void maybeForceBuilderInitialization() {
if (com.google.protobuf.GeneratedMessageV3
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}
}
@java.lang.Override
public Builder clear() {
super.clear();
if (zygosityBuilder_ == null) {
zygosity_ = null;
} else {
zygosity_ = null;
zygosityBuilder_ = null;
}
alleleCase_ = 0;
allele_ = null;
return this;
}
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getDescriptorForType() {
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@java.lang.Override
public org.phenopackets.schema.v1.core.Variant getDefaultInstanceForType() {
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Variant build() {
org.phenopackets.schema.v1.core.Variant result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Variant buildPartial() {
org.phenopackets.schema.v1.core.Variant result = new org.phenopackets.schema.v1.core.Variant(this);
if (alleleCase_ == 2) {
if (hgvsAlleleBuilder_ == null) {
result.allele_ = allele_;
} else {
result.allele_ = hgvsAlleleBuilder_.build();
}
}
if (alleleCase_ == 3) {
if (vcfAlleleBuilder_ == null) {
result.allele_ = allele_;
} else {
result.allele_ = vcfAlleleBuilder_.build();
}
}
if (alleleCase_ == 4) {
if (spdiAlleleBuilder_ == null) {
result.allele_ = allele_;
} else {
result.allele_ = spdiAlleleBuilder_.build();
}
}
if (alleleCase_ == 5) {
if (iscnAlleleBuilder_ == null) {
result.allele_ = allele_;
} else {
result.allele_ = iscnAlleleBuilder_.build();
}
}
if (zygosityBuilder_ == null) {
result.zygosity_ = zygosity_;
} else {
result.zygosity_ = zygosityBuilder_.build();
}
result.alleleCase_ = alleleCase_;
onBuilt();
return result;
}
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public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.core.Variant) {
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return this;
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public Builder mergeFrom(org.phenopackets.schema.v1.core.Variant other) {
if (other == org.phenopackets.schema.v1.core.Variant.getDefaultInstance()) return this;
if (other.hasZygosity()) {
mergeZygosity(other.getZygosity());
}
switch (other.getAlleleCase()) {
case HGVS_ALLELE: {
mergeHgvsAllele(other.getHgvsAllele());
break;
}
case VCF_ALLELE: {
mergeVcfAllele(other.getVcfAllele());
break;
}
case SPDI_ALLELE: {
mergeSpdiAllele(other.getSpdiAllele());
break;
}
case ISCN_ALLELE: {
mergeIscnAllele(other.getIscnAllele());
break;
}
case ALLELE_NOT_SET: {
break;
}
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.core.Variant parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.core.Variant) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private int alleleCase_ = 0;
private java.lang.Object allele_;
public AlleleCase
getAlleleCase() {
return AlleleCase.forNumber(
alleleCase_);
}
public Builder clearAllele() {
alleleCase_ = 0;
allele_ = null;
onChanged();
return this;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.HgvsAllele, org.phenopackets.schema.v1.core.HgvsAllele.Builder, org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder> hgvsAlleleBuilder_;
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public boolean hasHgvsAllele() {
return alleleCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public org.phenopackets.schema.v1.core.HgvsAllele getHgvsAllele() {
if (hgvsAlleleBuilder_ == null) {
if (alleleCase_ == 2) {
return (org.phenopackets.schema.v1.core.HgvsAllele) allele_;
}
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
} else {
if (alleleCase_ == 2) {
return hgvsAlleleBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public Builder setHgvsAllele(org.phenopackets.schema.v1.core.HgvsAllele value) {
if (hgvsAlleleBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
allele_ = value;
onChanged();
} else {
hgvsAlleleBuilder_.setMessage(value);
}
alleleCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public Builder setHgvsAllele(
org.phenopackets.schema.v1.core.HgvsAllele.Builder builderForValue) {
if (hgvsAlleleBuilder_ == null) {
allele_ = builderForValue.build();
onChanged();
} else {
hgvsAlleleBuilder_.setMessage(builderForValue.build());
}
alleleCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public Builder mergeHgvsAllele(org.phenopackets.schema.v1.core.HgvsAllele value) {
if (hgvsAlleleBuilder_ == null) {
if (alleleCase_ == 2 &&
allele_ != org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance()) {
allele_ = org.phenopackets.schema.v1.core.HgvsAllele.newBuilder((org.phenopackets.schema.v1.core.HgvsAllele) allele_)
.mergeFrom(value).buildPartial();
} else {
allele_ = value;
}
onChanged();
} else {
if (alleleCase_ == 2) {
hgvsAlleleBuilder_.mergeFrom(value);
}
hgvsAlleleBuilder_.setMessage(value);
}
alleleCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public Builder clearHgvsAllele() {
if (hgvsAlleleBuilder_ == null) {
if (alleleCase_ == 2) {
alleleCase_ = 0;
allele_ = null;
onChanged();
}
} else {
if (alleleCase_ == 2) {
alleleCase_ = 0;
allele_ = null;
}
hgvsAlleleBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public org.phenopackets.schema.v1.core.HgvsAllele.Builder getHgvsAlleleBuilder() {
return getHgvsAlleleFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
public org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder getHgvsAlleleOrBuilder() {
if ((alleleCase_ == 2) && (hgvsAlleleBuilder_ != null)) {
return hgvsAlleleBuilder_.getMessageOrBuilder();
} else {
if (alleleCase_ == 2) {
return (org.phenopackets.schema.v1.core.HgvsAllele) allele_;
}
return org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.HgvsAllele, org.phenopackets.schema.v1.core.HgvsAllele.Builder, org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder>
getHgvsAlleleFieldBuilder() {
if (hgvsAlleleBuilder_ == null) {
if (!(alleleCase_ == 2)) {
allele_ = org.phenopackets.schema.v1.core.HgvsAllele.getDefaultInstance();
}
hgvsAlleleBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.HgvsAllele, org.phenopackets.schema.v1.core.HgvsAllele.Builder, org.phenopackets.schema.v1.core.HgvsAlleleOrBuilder>(
(org.phenopackets.schema.v1.core.HgvsAllele) allele_,
getParentForChildren(),
isClean());
allele_ = null;
}
alleleCase_ = 2;
onChanged();;
return hgvsAlleleBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.VcfAllele, org.phenopackets.schema.v1.core.VcfAllele.Builder, org.phenopackets.schema.v1.core.VcfAlleleOrBuilder> vcfAlleleBuilder_;
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public boolean hasVcfAllele() {
return alleleCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public org.phenopackets.schema.v1.core.VcfAllele getVcfAllele() {
if (vcfAlleleBuilder_ == null) {
if (alleleCase_ == 3) {
return (org.phenopackets.schema.v1.core.VcfAllele) allele_;
}
return org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
} else {
if (alleleCase_ == 3) {
return vcfAlleleBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public Builder setVcfAllele(org.phenopackets.schema.v1.core.VcfAllele value) {
if (vcfAlleleBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
allele_ = value;
onChanged();
} else {
vcfAlleleBuilder_.setMessage(value);
}
alleleCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public Builder setVcfAllele(
org.phenopackets.schema.v1.core.VcfAllele.Builder builderForValue) {
if (vcfAlleleBuilder_ == null) {
allele_ = builderForValue.build();
onChanged();
} else {
vcfAlleleBuilder_.setMessage(builderForValue.build());
}
alleleCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public Builder mergeVcfAllele(org.phenopackets.schema.v1.core.VcfAllele value) {
if (vcfAlleleBuilder_ == null) {
if (alleleCase_ == 3 &&
allele_ != org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance()) {
allele_ = org.phenopackets.schema.v1.core.VcfAllele.newBuilder((org.phenopackets.schema.v1.core.VcfAllele) allele_)
.mergeFrom(value).buildPartial();
} else {
allele_ = value;
}
onChanged();
} else {
if (alleleCase_ == 3) {
vcfAlleleBuilder_.mergeFrom(value);
}
vcfAlleleBuilder_.setMessage(value);
}
alleleCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public Builder clearVcfAllele() {
if (vcfAlleleBuilder_ == null) {
if (alleleCase_ == 3) {
alleleCase_ = 0;
allele_ = null;
onChanged();
}
} else {
if (alleleCase_ == 3) {
alleleCase_ = 0;
allele_ = null;
}
vcfAlleleBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public org.phenopackets.schema.v1.core.VcfAllele.Builder getVcfAlleleBuilder() {
return getVcfAlleleFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
public org.phenopackets.schema.v1.core.VcfAlleleOrBuilder getVcfAlleleOrBuilder() {
if ((alleleCase_ == 3) && (vcfAlleleBuilder_ != null)) {
return vcfAlleleBuilder_.getMessageOrBuilder();
} else {
if (alleleCase_ == 3) {
return (org.phenopackets.schema.v1.core.VcfAllele) allele_;
}
return org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.VcfAllele, org.phenopackets.schema.v1.core.VcfAllele.Builder, org.phenopackets.schema.v1.core.VcfAlleleOrBuilder>
getVcfAlleleFieldBuilder() {
if (vcfAlleleBuilder_ == null) {
if (!(alleleCase_ == 3)) {
allele_ = org.phenopackets.schema.v1.core.VcfAllele.getDefaultInstance();
}
vcfAlleleBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.VcfAllele, org.phenopackets.schema.v1.core.VcfAllele.Builder, org.phenopackets.schema.v1.core.VcfAlleleOrBuilder>(
(org.phenopackets.schema.v1.core.VcfAllele) allele_,
getParentForChildren(),
isClean());
allele_ = null;
}
alleleCase_ = 3;
onChanged();;
return vcfAlleleBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.SpdiAllele, org.phenopackets.schema.v1.core.SpdiAllele.Builder, org.phenopackets.schema.v1.core.SpdiAlleleOrBuilder> spdiAlleleBuilder_;
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public boolean hasSpdiAllele() {
return alleleCase_ == 4;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public org.phenopackets.schema.v1.core.SpdiAllele getSpdiAllele() {
if (spdiAlleleBuilder_ == null) {
if (alleleCase_ == 4) {
return (org.phenopackets.schema.v1.core.SpdiAllele) allele_;
}
return org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
} else {
if (alleleCase_ == 4) {
return spdiAlleleBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public Builder setSpdiAllele(org.phenopackets.schema.v1.core.SpdiAllele value) {
if (spdiAlleleBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
allele_ = value;
onChanged();
} else {
spdiAlleleBuilder_.setMessage(value);
}
alleleCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public Builder setSpdiAllele(
org.phenopackets.schema.v1.core.SpdiAllele.Builder builderForValue) {
if (spdiAlleleBuilder_ == null) {
allele_ = builderForValue.build();
onChanged();
} else {
spdiAlleleBuilder_.setMessage(builderForValue.build());
}
alleleCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public Builder mergeSpdiAllele(org.phenopackets.schema.v1.core.SpdiAllele value) {
if (spdiAlleleBuilder_ == null) {
if (alleleCase_ == 4 &&
allele_ != org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance()) {
allele_ = org.phenopackets.schema.v1.core.SpdiAllele.newBuilder((org.phenopackets.schema.v1.core.SpdiAllele) allele_)
.mergeFrom(value).buildPartial();
} else {
allele_ = value;
}
onChanged();
} else {
if (alleleCase_ == 4) {
spdiAlleleBuilder_.mergeFrom(value);
}
spdiAlleleBuilder_.setMessage(value);
}
alleleCase_ = 4;
return this;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public Builder clearSpdiAllele() {
if (spdiAlleleBuilder_ == null) {
if (alleleCase_ == 4) {
alleleCase_ = 0;
allele_ = null;
onChanged();
}
} else {
if (alleleCase_ == 4) {
alleleCase_ = 0;
allele_ = null;
}
spdiAlleleBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public org.phenopackets.schema.v1.core.SpdiAllele.Builder getSpdiAlleleBuilder() {
return getSpdiAlleleFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
public org.phenopackets.schema.v1.core.SpdiAlleleOrBuilder getSpdiAlleleOrBuilder() {
if ((alleleCase_ == 4) && (spdiAlleleBuilder_ != null)) {
return spdiAlleleBuilder_.getMessageOrBuilder();
} else {
if (alleleCase_ == 4) {
return (org.phenopackets.schema.v1.core.SpdiAllele) allele_;
}
return org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.SpdiAllele, org.phenopackets.schema.v1.core.SpdiAllele.Builder, org.phenopackets.schema.v1.core.SpdiAlleleOrBuilder>
getSpdiAlleleFieldBuilder() {
if (spdiAlleleBuilder_ == null) {
if (!(alleleCase_ == 4)) {
allele_ = org.phenopackets.schema.v1.core.SpdiAllele.getDefaultInstance();
}
spdiAlleleBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.SpdiAllele, org.phenopackets.schema.v1.core.SpdiAllele.Builder, org.phenopackets.schema.v1.core.SpdiAlleleOrBuilder>(
(org.phenopackets.schema.v1.core.SpdiAllele) allele_,
getParentForChildren(),
isClean());
allele_ = null;
}
alleleCase_ = 4;
onChanged();;
return spdiAlleleBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.IscnAllele, org.phenopackets.schema.v1.core.IscnAllele.Builder, org.phenopackets.schema.v1.core.IscnAlleleOrBuilder> iscnAlleleBuilder_;
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public boolean hasIscnAllele() {
return alleleCase_ == 5;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public org.phenopackets.schema.v1.core.IscnAllele getIscnAllele() {
if (iscnAlleleBuilder_ == null) {
if (alleleCase_ == 5) {
return (org.phenopackets.schema.v1.core.IscnAllele) allele_;
}
return org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
} else {
if (alleleCase_ == 5) {
return iscnAlleleBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public Builder setIscnAllele(org.phenopackets.schema.v1.core.IscnAllele value) {
if (iscnAlleleBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
allele_ = value;
onChanged();
} else {
iscnAlleleBuilder_.setMessage(value);
}
alleleCase_ = 5;
return this;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public Builder setIscnAllele(
org.phenopackets.schema.v1.core.IscnAllele.Builder builderForValue) {
if (iscnAlleleBuilder_ == null) {
allele_ = builderForValue.build();
onChanged();
} else {
iscnAlleleBuilder_.setMessage(builderForValue.build());
}
alleleCase_ = 5;
return this;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public Builder mergeIscnAllele(org.phenopackets.schema.v1.core.IscnAllele value) {
if (iscnAlleleBuilder_ == null) {
if (alleleCase_ == 5 &&
allele_ != org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance()) {
allele_ = org.phenopackets.schema.v1.core.IscnAllele.newBuilder((org.phenopackets.schema.v1.core.IscnAllele) allele_)
.mergeFrom(value).buildPartial();
} else {
allele_ = value;
}
onChanged();
} else {
if (alleleCase_ == 5) {
iscnAlleleBuilder_.mergeFrom(value);
}
iscnAlleleBuilder_.setMessage(value);
}
alleleCase_ = 5;
return this;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public Builder clearIscnAllele() {
if (iscnAlleleBuilder_ == null) {
if (alleleCase_ == 5) {
alleleCase_ = 0;
allele_ = null;
onChanged();
}
} else {
if (alleleCase_ == 5) {
alleleCase_ = 0;
allele_ = null;
}
iscnAlleleBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public org.phenopackets.schema.v1.core.IscnAllele.Builder getIscnAlleleBuilder() {
return getIscnAlleleFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
public org.phenopackets.schema.v1.core.IscnAlleleOrBuilder getIscnAlleleOrBuilder() {
if ((alleleCase_ == 5) && (iscnAlleleBuilder_ != null)) {
return iscnAlleleBuilder_.getMessageOrBuilder();
} else {
if (alleleCase_ == 5) {
return (org.phenopackets.schema.v1.core.IscnAllele) allele_;
}
return org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.IscnAllele, org.phenopackets.schema.v1.core.IscnAllele.Builder, org.phenopackets.schema.v1.core.IscnAlleleOrBuilder>
getIscnAlleleFieldBuilder() {
if (iscnAlleleBuilder_ == null) {
if (!(alleleCase_ == 5)) {
allele_ = org.phenopackets.schema.v1.core.IscnAllele.getDefaultInstance();
}
iscnAlleleBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.IscnAllele, org.phenopackets.schema.v1.core.IscnAllele.Builder, org.phenopackets.schema.v1.core.IscnAlleleOrBuilder>(
(org.phenopackets.schema.v1.core.IscnAllele) allele_,
getParentForChildren(),
isClean());
allele_ = null;
}
alleleCase_ = 5;
onChanged();;
return iscnAlleleBuilder_;
}
private org.phenopackets.schema.v1.core.OntologyClass zygosity_;
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder> zygosityBuilder_;
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public boolean hasZygosity() {
return zygosityBuilder_ != null || zygosity_ != null;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public org.phenopackets.schema.v1.core.OntologyClass getZygosity() {
if (zygosityBuilder_ == null) {
return zygosity_ == null ? org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : zygosity_;
} else {
return zygosityBuilder_.getMessage();
}
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public Builder setZygosity(org.phenopackets.schema.v1.core.OntologyClass value) {
if (zygosityBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
zygosity_ = value;
onChanged();
} else {
zygosityBuilder_.setMessage(value);
}
return this;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public Builder setZygosity(
org.phenopackets.schema.v1.core.OntologyClass.Builder builderForValue) {
if (zygosityBuilder_ == null) {
zygosity_ = builderForValue.build();
onChanged();
} else {
zygosityBuilder_.setMessage(builderForValue.build());
}
return this;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public Builder mergeZygosity(org.phenopackets.schema.v1.core.OntologyClass value) {
if (zygosityBuilder_ == null) {
if (zygosity_ != null) {
zygosity_ =
org.phenopackets.schema.v1.core.OntologyClass.newBuilder(zygosity_).mergeFrom(value).buildPartial();
} else {
zygosity_ = value;
}
onChanged();
} else {
zygosityBuilder_.mergeFrom(value);
}
return this;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public Builder clearZygosity() {
if (zygosityBuilder_ == null) {
zygosity_ = null;
onChanged();
} else {
zygosity_ = null;
zygosityBuilder_ = null;
}
return this;
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public org.phenopackets.schema.v1.core.OntologyClass.Builder getZygosityBuilder() {
onChanged();
return getZygosityFieldBuilder().getBuilder();
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
public org.phenopackets.schema.v1.core.OntologyClassOrBuilder getZygosityOrBuilder() {
if (zygosityBuilder_ != null) {
return zygosityBuilder_.getMessageOrBuilder();
} else {
return zygosity_ == null ?
org.phenopackets.schema.v1.core.OntologyClass.getDefaultInstance() : zygosity_;
}
}
/**
*
* Zygosity of the allele using GENO ontology
*
*
* .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>
getZygosityFieldBuilder() {
if (zygosityBuilder_ == null) {
zygosityBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.OntologyClass, org.phenopackets.schema.v1.core.OntologyClass.Builder, org.phenopackets.schema.v1.core.OntologyClassOrBuilder>(
getZygosity(),
getParentForChildren(),
isClean());
zygosity_ = null;
}
return zygosityBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.core.Variant)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Variant)
private static final org.phenopackets.schema.v1.core.Variant DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.core.Variant();
}
public static org.phenopackets.schema.v1.core.Variant getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Variant parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new Variant(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.core.Variant getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}