org.phenopackets.schema.v1.core.VcfAlleleOrBuilder Maven / Gradle / Ivy

Show more of this group Show more artifacts with this name
Show all versions of phenopacket-schema Show documentation

A Protobuf schema for capturing clinical phenotypes

There is a newer version: 2.0.2

// Generated by the protocol buffer compiler.  DO NOT EDIT!
// source: base.proto

package org.phenopackets.schema.v1.core;

public interface VcfAlleleOrBuilder extends
    // @@protoc_insertion_point(interface_extends:org.phenopackets.schema.v1.core.VcfAllele)
    com.google.protobuf.MessageOrBuilder {

  /**
   *    * The value of the VCF spec fileformat field: e.g VCFv4.1, VCFv4.2, VCFv4.3
   * 
   *
   * string vcf_version = 1;
   */
  java.lang.String getVcfVersion();
  /**
   *    * The value of the VCF spec fileformat field: e.g VCFv4.1, VCFv4.2, VCFv4.3
   * 
   *
   * string vcf_version = 1;
   */
  com.google.protobuf.ByteString
      getVcfVersionBytes();

  /**
   *    * Genome assembly the allele was called against. We recommend using the Genome Reference Consortium
   * nomenclature e.g. GRCh37, GRCh38
   * 
   *
   * string genome_assembly = 2;
   */
  java.lang.String getGenomeAssembly();
  /**
   *    * Genome assembly the allele was called against. We recommend using the Genome Reference Consortium
   * nomenclature e.g. GRCh37, GRCh38
   * 
   *
   * string genome_assembly = 2;
   */
  com.google.protobuf.ByteString
      getGenomeAssemblyBytes();

  /**
   * string id = 3;
   */
  java.lang.String getId();
  /**
   * string id = 3;
   */
  com.google.protobuf.ByteString
      getIdBytes();

  /**
   * string chr = 4;
   */
  java.lang.String getChr();
  /**
   * string chr = 4;
   */
  com.google.protobuf.ByteString
      getChrBytes();

  /**
   * int32 pos = 5;
   */
  int getPos();

  /**
   * string ref = 6;
   */
  java.lang.String getRef();
  /**
   * string ref = 6;
   */
  com.google.protobuf.ByteString
      getRefBytes();

  /**
   * string alt = 7;
   */
  java.lang.String getAlt();
  /**
   * string alt = 7;
   */
  com.google.protobuf.ByteString
      getAltBytes();

  /**
   * string info = 8;
   */
  java.lang.String getInfo();
  /**
   * string info = 8;
   */
  com.google.protobuf.ByteString
      getInfoBytes();
}