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// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: phenopackets/schema/v1/interpretation.proto
package org.phenopackets.schema.v1;
/**
*
* A statement about the contribution of a genomic element towards the observed phenotype. Note that this does not intend
* to encode any knowledge or results of specific computations.
*
*
* Protobuf type {@code org.phenopackets.schema.v1.GenomicInterpretation}
*/
public final class GenomicInterpretation extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:org.phenopackets.schema.v1.GenomicInterpretation)
GenomicInterpretationOrBuilder {
private static final long serialVersionUID = 0L;
// Use GenomicInterpretation.newBuilder() to construct.
private GenomicInterpretation(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private GenomicInterpretation() {
status_ = 0;
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new GenomicInterpretation();
}
@java.lang.Override
public final com.google.protobuf.UnknownFieldSet
getUnknownFields() {
return this.unknownFields;
}
private GenomicInterpretation(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
this();
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
com.google.protobuf.UnknownFieldSet.Builder unknownFields =
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e).setUnfinishedMessage(this);
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makeExtensionsImmutable();
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}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.InterpretationOuterClass.internal_static_org_phenopackets_schema_v1_GenomicInterpretation_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.InterpretationOuterClass.internal_static_org_phenopackets_schema_v1_GenomicInterpretation_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.GenomicInterpretation.class, org.phenopackets.schema.v1.GenomicInterpretation.Builder.class);
}
/**
* Protobuf enum {@code org.phenopackets.schema.v1.GenomicInterpretation.Status}
*/
public enum Status
implements com.google.protobuf.ProtocolMessageEnum {
/**
* UNKNOWN = 0;
*/
UNKNOWN(0),
/**
* REJECTED = 1;
*/
REJECTED(1),
/**
* CANDIDATE = 2;
*/
CANDIDATE(2),
/**
* CAUSATIVE = 3;
*/
CAUSATIVE(3),
UNRECOGNIZED(-1),
;
/**
* UNKNOWN = 0;
*/
public static final int UNKNOWN_VALUE = 0;
/**
* REJECTED = 1;
*/
public static final int REJECTED_VALUE = 1;
/**
* CANDIDATE = 2;
*/
public static final int CANDIDATE_VALUE = 2;
/**
* CAUSATIVE = 3;
*/
public static final int CAUSATIVE_VALUE = 3;
public final int getNumber() {
if (this == UNRECOGNIZED) {
throw new java.lang.IllegalArgumentException(
"Can't get the number of an unknown enum value.");
}
return value;
}
/**
* @param value The numeric wire value of the corresponding enum entry.
* @return The enum associated with the given numeric wire value.
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static Status valueOf(int value) {
return forNumber(value);
}
/**
* @param value The numeric wire value of the corresponding enum entry.
* @return The enum associated with the given numeric wire value.
*/
public static Status forNumber(int value) {
switch (value) {
case 0: return UNKNOWN;
case 1: return REJECTED;
case 2: return CANDIDATE;
case 3: return CAUSATIVE;
default: return null;
}
}
public static com.google.protobuf.Internal.EnumLiteMap
internalGetValueMap() {
return internalValueMap;
}
private static final com.google.protobuf.Internal.EnumLiteMap<
Status> internalValueMap =
new com.google.protobuf.Internal.EnumLiteMap() {
public Status findValueByNumber(int number) {
return Status.forNumber(number);
}
};
public final com.google.protobuf.Descriptors.EnumValueDescriptor
getValueDescriptor() {
if (this == UNRECOGNIZED) {
throw new java.lang.IllegalStateException(
"Can't get the descriptor of an unrecognized enum value.");
}
return getDescriptor().getValues().get(ordinal());
}
public final com.google.protobuf.Descriptors.EnumDescriptor
getDescriptorForType() {
return getDescriptor();
}
public static final com.google.protobuf.Descriptors.EnumDescriptor
getDescriptor() {
return org.phenopackets.schema.v1.GenomicInterpretation.getDescriptor().getEnumTypes().get(0);
}
private static final Status[] VALUES = values();
public static Status valueOf(
com.google.protobuf.Descriptors.EnumValueDescriptor desc) {
if (desc.getType() != getDescriptor()) {
throw new java.lang.IllegalArgumentException(
"EnumValueDescriptor is not for this type.");
}
if (desc.getIndex() == -1) {
return UNRECOGNIZED;
}
return VALUES[desc.getIndex()];
}
private final int value;
private Status(int value) {
this.value = value;
}
// @@protoc_insertion_point(enum_scope:org.phenopackets.schema.v1.GenomicInterpretation.Status)
}
private int callCase_ = 0;
private java.lang.Object call_;
public enum CallCase
implements com.google.protobuf.Internal.EnumLite,
com.google.protobuf.AbstractMessage.InternalOneOfEnum {
GENE(2),
VARIANT(3),
CALL_NOT_SET(0);
private final int value;
private CallCase(int value) {
this.value = value;
}
/**
* @param value The number of the enum to look for.
* @return The enum associated with the given number.
* @deprecated Use {@link #forNumber(int)} instead.
*/
@java.lang.Deprecated
public static CallCase valueOf(int value) {
return forNumber(value);
}
public static CallCase forNumber(int value) {
switch (value) {
case 2: return GENE;
case 3: return VARIANT;
case 0: return CALL_NOT_SET;
default: return null;
}
}
public int getNumber() {
return this.value;
}
};
public CallCase
getCallCase() {
return CallCase.forNumber(
callCase_);
}
public static final int STATUS_FIELD_NUMBER = 1;
private int status_;
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @return The enum numeric value on the wire for status.
*/
@java.lang.Override public int getStatusValue() {
return status_;
}
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @return The status.
*/
@java.lang.Override public org.phenopackets.schema.v1.GenomicInterpretation.Status getStatus() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.GenomicInterpretation.Status result = org.phenopackets.schema.v1.GenomicInterpretation.Status.valueOf(status_);
return result == null ? org.phenopackets.schema.v1.GenomicInterpretation.Status.UNRECOGNIZED : result;
}
public static final int GENE_FIELD_NUMBER = 2;
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
* @return Whether the gene field is set.
*/
@java.lang.Override
public boolean hasGene() {
return callCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
* @return The gene.
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.Gene getGene() {
if (callCase_ == 2) {
return (org.phenopackets.schema.v1.core.Gene) call_;
}
return org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.GeneOrBuilder getGeneOrBuilder() {
if (callCase_ == 2) {
return (org.phenopackets.schema.v1.core.Gene) call_;
}
return org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
}
public static final int VARIANT_FIELD_NUMBER = 3;
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
* @return Whether the variant field is set.
*/
@java.lang.Override
public boolean hasVariant() {
return callCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
* @return The variant.
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.Variant getVariant() {
if (callCase_ == 3) {
return (org.phenopackets.schema.v1.core.Variant) call_;
}
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.VariantOrBuilder getVariantOrBuilder() {
if (callCase_ == 3) {
return (org.phenopackets.schema.v1.core.Variant) call_;
}
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
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private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (status_ != org.phenopackets.schema.v1.GenomicInterpretation.Status.UNKNOWN.getNumber()) {
output.writeEnum(1, status_);
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if (callCase_ == 2) {
output.writeMessage(2, (org.phenopackets.schema.v1.core.Gene) call_);
}
if (callCase_ == 3) {
output.writeMessage(3, (org.phenopackets.schema.v1.core.Variant) call_);
}
unknownFields.writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (status_ != org.phenopackets.schema.v1.GenomicInterpretation.Status.UNKNOWN.getNumber()) {
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size += com.google.protobuf.CodedOutputStream
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}
size += unknownFields.getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof org.phenopackets.schema.v1.GenomicInterpretation)) {
return super.equals(obj);
}
org.phenopackets.schema.v1.GenomicInterpretation other = (org.phenopackets.schema.v1.GenomicInterpretation) obj;
if (status_ != other.status_) return false;
if (!getCallCase().equals(other.getCallCase())) return false;
switch (callCase_) {
case 2:
if (!getGene()
.equals(other.getGene())) return false;
break;
case 3:
if (!getVariant()
.equals(other.getVariant())) return false;
break;
case 0:
default:
}
if (!unknownFields.equals(other.unknownFields)) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
hash = (37 * hash) + STATUS_FIELD_NUMBER;
hash = (53 * hash) + status_;
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hash = (53 * hash) + getGene().hashCode();
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case 3:
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hash = (53 * hash) + getVariant().hashCode();
break;
case 0:
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}
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}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static org.phenopackets.schema.v1.GenomicInterpretation parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(org.phenopackets.schema.v1.GenomicInterpretation prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
*
* A statement about the contribution of a genomic element towards the observed phenotype. Note that this does not intend
* to encode any knowledge or results of specific computations.
*
*
* Protobuf type {@code org.phenopackets.schema.v1.GenomicInterpretation}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:org.phenopackets.schema.v1.GenomicInterpretation)
org.phenopackets.schema.v1.GenomicInterpretationOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return org.phenopackets.schema.v1.InterpretationOuterClass.internal_static_org_phenopackets_schema_v1_GenomicInterpretation_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return org.phenopackets.schema.v1.InterpretationOuterClass.internal_static_org_phenopackets_schema_v1_GenomicInterpretation_fieldAccessorTable
.ensureFieldAccessorsInitialized(
org.phenopackets.schema.v1.GenomicInterpretation.class, org.phenopackets.schema.v1.GenomicInterpretation.Builder.class);
}
// Construct using org.phenopackets.schema.v1.GenomicInterpretation.newBuilder()
private Builder() {
maybeForceBuilderInitialization();
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
maybeForceBuilderInitialization();
}
private void maybeForceBuilderInitialization() {
if (com.google.protobuf.GeneratedMessageV3
.alwaysUseFieldBuilders) {
}
}
@java.lang.Override
public Builder clear() {
super.clear();
status_ = 0;
callCase_ = 0;
call_ = null;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return org.phenopackets.schema.v1.InterpretationOuterClass.internal_static_org_phenopackets_schema_v1_GenomicInterpretation_descriptor;
}
@java.lang.Override
public org.phenopackets.schema.v1.GenomicInterpretation getDefaultInstanceForType() {
return org.phenopackets.schema.v1.GenomicInterpretation.getDefaultInstance();
}
@java.lang.Override
public org.phenopackets.schema.v1.GenomicInterpretation build() {
org.phenopackets.schema.v1.GenomicInterpretation result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public org.phenopackets.schema.v1.GenomicInterpretation buildPartial() {
org.phenopackets.schema.v1.GenomicInterpretation result = new org.phenopackets.schema.v1.GenomicInterpretation(this);
result.status_ = status_;
if (callCase_ == 2) {
if (geneBuilder_ == null) {
result.call_ = call_;
} else {
result.call_ = geneBuilder_.build();
}
}
if (callCase_ == 3) {
if (variantBuilder_ == null) {
result.call_ = call_;
} else {
result.call_ = variantBuilder_.build();
}
}
result.callCase_ = callCase_;
onBuilt();
return result;
}
@java.lang.Override
public Builder clone() {
return super.clone();
}
@java.lang.Override
public Builder setField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.setField(field, value);
}
@java.lang.Override
public Builder clearField(
com.google.protobuf.Descriptors.FieldDescriptor field) {
return super.clearField(field);
}
@java.lang.Override
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com.google.protobuf.Descriptors.OneofDescriptor oneof) {
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@java.lang.Override
public Builder setRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
int index, java.lang.Object value) {
return super.setRepeatedField(field, index, value);
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@java.lang.Override
public Builder addRepeatedField(
com.google.protobuf.Descriptors.FieldDescriptor field,
java.lang.Object value) {
return super.addRepeatedField(field, value);
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof org.phenopackets.schema.v1.GenomicInterpretation) {
return mergeFrom((org.phenopackets.schema.v1.GenomicInterpretation)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(org.phenopackets.schema.v1.GenomicInterpretation other) {
if (other == org.phenopackets.schema.v1.GenomicInterpretation.getDefaultInstance()) return this;
if (other.status_ != 0) {
setStatusValue(other.getStatusValue());
}
switch (other.getCallCase()) {
case GENE: {
mergeGene(other.getGene());
break;
}
case VARIANT: {
mergeVariant(other.getVariant());
break;
}
case CALL_NOT_SET: {
break;
}
}
this.mergeUnknownFields(other.unknownFields);
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
org.phenopackets.schema.v1.GenomicInterpretation parsedMessage = null;
try {
parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
parsedMessage = (org.phenopackets.schema.v1.GenomicInterpretation) e.getUnfinishedMessage();
throw e.unwrapIOException();
} finally {
if (parsedMessage != null) {
mergeFrom(parsedMessage);
}
}
return this;
}
private int callCase_ = 0;
private java.lang.Object call_;
public CallCase
getCallCase() {
return CallCase.forNumber(
callCase_);
}
public Builder clearCall() {
callCase_ = 0;
call_ = null;
onChanged();
return this;
}
private int status_ = 0;
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @return The enum numeric value on the wire for status.
*/
@java.lang.Override public int getStatusValue() {
return status_;
}
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @param value The enum numeric value on the wire for status to set.
* @return This builder for chaining.
*/
public Builder setStatusValue(int value) {
status_ = value;
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @return The status.
*/
@java.lang.Override
public org.phenopackets.schema.v1.GenomicInterpretation.Status getStatus() {
@SuppressWarnings("deprecation")
org.phenopackets.schema.v1.GenomicInterpretation.Status result = org.phenopackets.schema.v1.GenomicInterpretation.Status.valueOf(status_);
return result == null ? org.phenopackets.schema.v1.GenomicInterpretation.Status.UNRECOGNIZED : result;
}
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @param value The status to set.
* @return This builder for chaining.
*/
public Builder setStatus(org.phenopackets.schema.v1.GenomicInterpretation.Status value) {
if (value == null) {
throw new NullPointerException();
}
status_ = value.getNumber();
onChanged();
return this;
}
/**
* .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
* @return This builder for chaining.
*/
public Builder clearStatus() {
status_ = 0;
onChanged();
return this;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Gene, org.phenopackets.schema.v1.core.Gene.Builder, org.phenopackets.schema.v1.core.GeneOrBuilder> geneBuilder_;
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
* @return Whether the gene field is set.
*/
@java.lang.Override
public boolean hasGene() {
return callCase_ == 2;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
* @return The gene.
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.Gene getGene() {
if (geneBuilder_ == null) {
if (callCase_ == 2) {
return (org.phenopackets.schema.v1.core.Gene) call_;
}
return org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
} else {
if (callCase_ == 2) {
return geneBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
public Builder setGene(org.phenopackets.schema.v1.core.Gene value) {
if (geneBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
call_ = value;
onChanged();
} else {
geneBuilder_.setMessage(value);
}
callCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
public Builder setGene(
org.phenopackets.schema.v1.core.Gene.Builder builderForValue) {
if (geneBuilder_ == null) {
call_ = builderForValue.build();
onChanged();
} else {
geneBuilder_.setMessage(builderForValue.build());
}
callCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
public Builder mergeGene(org.phenopackets.schema.v1.core.Gene value) {
if (geneBuilder_ == null) {
if (callCase_ == 2 &&
call_ != org.phenopackets.schema.v1.core.Gene.getDefaultInstance()) {
call_ = org.phenopackets.schema.v1.core.Gene.newBuilder((org.phenopackets.schema.v1.core.Gene) call_)
.mergeFrom(value).buildPartial();
} else {
call_ = value;
}
onChanged();
} else {
if (callCase_ == 2) {
geneBuilder_.mergeFrom(value);
} else {
geneBuilder_.setMessage(value);
}
}
callCase_ = 2;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
public Builder clearGene() {
if (geneBuilder_ == null) {
if (callCase_ == 2) {
callCase_ = 0;
call_ = null;
onChanged();
}
} else {
if (callCase_ == 2) {
callCase_ = 0;
call_ = null;
}
geneBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
public org.phenopackets.schema.v1.core.Gene.Builder getGeneBuilder() {
return getGeneFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.GeneOrBuilder getGeneOrBuilder() {
if ((callCase_ == 2) && (geneBuilder_ != null)) {
return geneBuilder_.getMessageOrBuilder();
} else {
if (callCase_ == 2) {
return (org.phenopackets.schema.v1.core.Gene) call_;
}
return org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Gene gene = 2;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Gene, org.phenopackets.schema.v1.core.Gene.Builder, org.phenopackets.schema.v1.core.GeneOrBuilder>
getGeneFieldBuilder() {
if (geneBuilder_ == null) {
if (!(callCase_ == 2)) {
call_ = org.phenopackets.schema.v1.core.Gene.getDefaultInstance();
}
geneBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Gene, org.phenopackets.schema.v1.core.Gene.Builder, org.phenopackets.schema.v1.core.GeneOrBuilder>(
(org.phenopackets.schema.v1.core.Gene) call_,
getParentForChildren(),
isClean());
call_ = null;
}
callCase_ = 2;
onChanged();;
return geneBuilder_;
}
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Variant, org.phenopackets.schema.v1.core.Variant.Builder, org.phenopackets.schema.v1.core.VariantOrBuilder> variantBuilder_;
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
* @return Whether the variant field is set.
*/
@java.lang.Override
public boolean hasVariant() {
return callCase_ == 3;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
* @return The variant.
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.Variant getVariant() {
if (variantBuilder_ == null) {
if (callCase_ == 3) {
return (org.phenopackets.schema.v1.core.Variant) call_;
}
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
} else {
if (callCase_ == 3) {
return variantBuilder_.getMessage();
}
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
public Builder setVariant(org.phenopackets.schema.v1.core.Variant value) {
if (variantBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
call_ = value;
onChanged();
} else {
variantBuilder_.setMessage(value);
}
callCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
public Builder setVariant(
org.phenopackets.schema.v1.core.Variant.Builder builderForValue) {
if (variantBuilder_ == null) {
call_ = builderForValue.build();
onChanged();
} else {
variantBuilder_.setMessage(builderForValue.build());
}
callCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
public Builder mergeVariant(org.phenopackets.schema.v1.core.Variant value) {
if (variantBuilder_ == null) {
if (callCase_ == 3 &&
call_ != org.phenopackets.schema.v1.core.Variant.getDefaultInstance()) {
call_ = org.phenopackets.schema.v1.core.Variant.newBuilder((org.phenopackets.schema.v1.core.Variant) call_)
.mergeFrom(value).buildPartial();
} else {
call_ = value;
}
onChanged();
} else {
if (callCase_ == 3) {
variantBuilder_.mergeFrom(value);
} else {
variantBuilder_.setMessage(value);
}
}
callCase_ = 3;
return this;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
public Builder clearVariant() {
if (variantBuilder_ == null) {
if (callCase_ == 3) {
callCase_ = 0;
call_ = null;
onChanged();
}
} else {
if (callCase_ == 3) {
callCase_ = 0;
call_ = null;
}
variantBuilder_.clear();
}
return this;
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
public org.phenopackets.schema.v1.core.Variant.Builder getVariantBuilder() {
return getVariantFieldBuilder().getBuilder();
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
@java.lang.Override
public org.phenopackets.schema.v1.core.VariantOrBuilder getVariantOrBuilder() {
if ((callCase_ == 3) && (variantBuilder_ != null)) {
return variantBuilder_.getMessageOrBuilder();
} else {
if (callCase_ == 3) {
return (org.phenopackets.schema.v1.core.Variant) call_;
}
return org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
}
}
/**
* .org.phenopackets.schema.v1.core.Variant variant = 3;
*/
private com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Variant, org.phenopackets.schema.v1.core.Variant.Builder, org.phenopackets.schema.v1.core.VariantOrBuilder>
getVariantFieldBuilder() {
if (variantBuilder_ == null) {
if (!(callCase_ == 3)) {
call_ = org.phenopackets.schema.v1.core.Variant.getDefaultInstance();
}
variantBuilder_ = new com.google.protobuf.SingleFieldBuilderV3<
org.phenopackets.schema.v1.core.Variant, org.phenopackets.schema.v1.core.Variant.Builder, org.phenopackets.schema.v1.core.VariantOrBuilder>(
(org.phenopackets.schema.v1.core.Variant) call_,
getParentForChildren(),
isClean());
call_ = null;
}
callCase_ = 3;
onChanged();;
return variantBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:org.phenopackets.schema.v1.GenomicInterpretation)
}
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.GenomicInterpretation)
private static final org.phenopackets.schema.v1.GenomicInterpretation DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new org.phenopackets.schema.v1.GenomicInterpretation();
}
public static org.phenopackets.schema.v1.GenomicInterpretation getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public GenomicInterpretation parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return new GenomicInterpretation(input, extensionRegistry);
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public org.phenopackets.schema.v1.GenomicInterpretation getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
