phenopackets.schema.v2.core.pedigree.proto Maven / Gradle / Ivy

syntax = "proto3";

package org.phenopackets.schema.v2.core;

import "phenopackets/schema/v2/core/individual.proto";

option java_multiple_files = true;
option java_package = "org.phenopackets.schema.v2.core";

// https://software.broadinstitute.org/gatk/documentation/article?id=11016
message Pedigree {
  repeated Person persons = 1;

  message Person {
    enum AffectedStatus {
      MISSING = 0;
      UNAFFECTED = 1;
      AFFECTED = 2;
    }
    string family_id = 1;
    string individual_id = 2;
    string paternal_id = 3;
    string maternal_id = 4;
    Sex sex = 5;
    AffectedStatus affected_status = 6;
  }
}