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Enables inclusion various chemical toolkits to HELMNotationToolkit
/*******************************************************************************
* Copyright C 2015, The Pistoia Alliance
*
* Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated
* documentation files (the "Software"), to deal in the Software without restriction, including without limitation the
* rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to
* permit persons to whom the Software is furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all copies or substantial portions of the
* Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE
* WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
* COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
* OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
******************************************************************************/
package org.helm.chemtoolkit;
import org.helm.chemtoolkit.AbstractMolecule.Flag;
/**
* @author chistyakov
*
*/
public abstract class IAtomBase implements IChemObjectBase {
protected Flag flag;
public abstract int getIBondCount();
public abstract IBondBase getIBond(int arg0) throws CTKException;
public abstract int getRgroup();
public abstract int getIAtno();
public abstract void setRgroup(int rGroup) throws CTKException;
/**
* @return atom
*/
public abstract Object getMolAtom();
public abstract boolean compare(Object obj);
public void setFlag(Flag flag) {
this.flag = flag;
}
public Flag getFlag() {
return this.flag;
}
}
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