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package org.rcsb.cif.schema.core;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* The CATEGORY of data items used to specify the hydrogen bond
* distances in the structural model as derived from atomic sites.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class GeomHbond extends DelegatingCategory.DelegatingCifCoreCategory {
private static final String NAME = "geom_hbond";
public GeomHbond(CifCoreBlock parentBlock) {
super(NAME, parentBlock);
}
/**
* Angle subtended by the sites identified by _geom_hbond.id.
* The hydrogen at site H is at the apex of the angle.
* @return FloatColumn
*/
public FloatColumn getAngleDha() {
return new DelegatingFloatColumn(parentBlock.getColumn("geom_hbond_angle_dha"));
}
/**
* An identifier for the hydrogen bond that is unique within the loop.
* @return StrColumn
*/
public StrColumn getId() {
return new DelegatingStrColumn(parentBlock.getColumn("geom_hbond_id"));
}
/**
* This code signals whether the hydrogen-bond information
* is referred to in a publication or should be placed in a
* table of significant hydrogen-bond geometry.
* @return StrColumn
*/
public StrColumn getPublFlag() {
return new DelegatingStrColumn(parentBlock.getColumn("geom_hbond_publ_flag"));
}
/**
* The set of data items which specify the symmetry operation codes
* which must be applied to the atom sites involved in the geometry angle.
*
* The symmetry code of each atom site as the symmetry-equivalent position
* number 'n' and the cell translation number 'pqr'. These numbers are
* combined to form the code 'n pqr' or n_pqr.
*
* The character string n_pqr is composed as follows:
*
* n refers to the symmetry operation that is applied to the
* coordinates stored in _atom_site.fract_xyz. It must match a
* number given in _symmetry_equiv.pos_site_id.
*
* p, q and r refer to the translations that are subsequently
* applied to the symmetry transformed coordinates to generate
* the atom used in calculating the angle. These translations
* (x,y,z) are related to (p,q,r) by the relations
* p = 5 + x
* q = 5 + y
* r = 5 + z
* @return StrColumn
*/
public StrColumn getSiteSymmetryA() {
return new DelegatingStrColumn(parentBlock.getColumn("geom_hbond_site_symmetry_a"));
}
/**
* The set of data items which specify the symmetry operation codes
* which must be applied to the atom sites involved in the geometry angle.
*
* The symmetry code of each atom site as the symmetry-equivalent position
* number 'n' and the cell translation number 'pqr'. These numbers are
* combined to form the code 'n pqr' or n_pqr.
*
* The character string n_pqr is composed as follows:
*
* n refers to the symmetry operation that is applied to the
* coordinates stored in _atom_site.fract_xyz. It must match a
* number given in _symmetry_equiv.pos_site_id.
*
* p, q and r refer to the translations that are subsequently
* applied to the symmetry transformed coordinates to generate
* the atom used in calculating the angle. These translations
* (x,y,z) are related to (p,q,r) by the relations
* p = 5 + x
* q = 5 + y
* r = 5 + z
* @return StrColumn
*/
public StrColumn getSiteSymmetryD() {
return new DelegatingStrColumn(parentBlock.getColumn("geom_hbond_site_symmetry_d"));
}
/**
* The set of data items which specify the symmetry operation codes
* which must be applied to the atom sites involved in the geometry angle.
*
* The symmetry code of each atom site as the symmetry-equivalent position
* number 'n' and the cell translation number 'pqr'. These numbers are
* combined to form the code 'n pqr' or n_pqr.
*
* The character string n_pqr is composed as follows:
*
* n refers to the symmetry operation that is applied to the
* coordinates stored in _atom_site.fract_xyz. It must match a
* number given in _symmetry_equiv.pos_site_id.
*
* p, q and r refer to the translations that are subsequently
* applied to the symmetry transformed coordinates to generate
* the atom used in calculating the angle. These translations
* (x,y,z) are related to (p,q,r) by the relations
* p = 5 + x
* q = 5 + y
* r = 5 + z
* @return StrColumn
*/
public StrColumn getSiteSymmetryH() {
return new DelegatingStrColumn(parentBlock.getColumn("geom_hbond_site_symmetry_h"));
}
/**
* Standard uncertainty of the angle subtended by the sites identified
* by _geom_hbond.id. The hydrogen at site H is at the apex of the angle.
* @return FloatColumn
*/
public FloatColumn getAngleDHAEsd() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_angle_DHA_esd", "geom_hbond_angle_dha_su"));
}
/**
* Standard uncertainty of the angle subtended by the sites identified
* by _geom_hbond.id. The hydrogen at site H is at the apex of the angle.
* @return FloatColumn
*/
public FloatColumn getAngleDhaSu() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_angle_DHA_esd", "geom_hbond_angle_dha_su"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteIdA() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_A", "geom_hbond_atom_site_label_a"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteLabelA() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_A", "geom_hbond_atom_site_label_a"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteIdD() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_D", "geom_hbond_atom_site_label_d"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteLabelD() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_D", "geom_hbond_atom_site_label_d"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteIdH() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_H", "geom_hbond_atom_site_label_h"));
}
/**
* This label is a unique identifier for a particular site in the
* asymmetric unit of the crystal unit cell.
* @return StrColumn
*/
public StrColumn getAtomSiteLabelH() {
return new DelegatingStrColumn(parentBlock.getAliasedColumn("geom_hbond_atom_site_id_H", "geom_hbond_atom_site_label_h"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistDA() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DA", "geom_hbond_distance_da"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceDa() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DA", "geom_hbond_distance_da"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistDAEsd() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DA_esd", "geom_hbond_distance_da_su"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceDaSu() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DA_esd", "geom_hbond_distance_da_su"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistDH() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DH", "geom_hbond_distance_dh"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceDh() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DH", "geom_hbond_distance_dh"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistDHEsd() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DH_esd", "geom_hbond_distance_dh_su"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceDhSu() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_DH_esd", "geom_hbond_distance_dh_su"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistHA() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_HA", "geom_hbond_distance_ha"));
}
/**
* The set of data items which specify the distance between the
* three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceHa() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_HA", "geom_hbond_distance_ha"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistHAEsd() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_HA_esd", "geom_hbond_distance_ha_su"));
}
/**
* Standard uncertainty of the set of data items which specify
* the distance between the three atom sites identified by _geom_hbond.id.
* @return FloatColumn
*/
public FloatColumn getDistanceHaSu() {
return new DelegatingFloatColumn(parentBlock.getAliasedColumn("geom_hbond_dist_HA_esd", "geom_hbond_distance_ha_su"));
}
}
