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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the ATOM_SITES category record details about
* the crystallographic cell and cell transformations, which are
* common to all atom sites.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class AtomSites extends DelegatingCategory {
public AtomSites(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "Cartn_transf_matrix[1][1]":
return getCartnTransfMatrix11();
case "Cartn_transf_matrix[1][2]":
return getCartnTransfMatrix12();
case "Cartn_transf_matrix[1][3]":
return getCartnTransfMatrix13();
case "Cartn_transf_matrix[2][1]":
return getCartnTransfMatrix21();
case "Cartn_transf_matrix[2][2]":
return getCartnTransfMatrix22();
case "Cartn_transf_matrix[2][3]":
return getCartnTransfMatrix23();
case "Cartn_transf_matrix[3][1]":
return getCartnTransfMatrix31();
case "Cartn_transf_matrix[3][2]":
return getCartnTransfMatrix32();
case "Cartn_transf_matrix[3][3]":
return getCartnTransfMatrix33();
case "Cartn_transf_vector[1]":
return getCartnTransfVector1();
case "Cartn_transf_vector[2]":
return getCartnTransfVector2();
case "Cartn_transf_vector[3]":
return getCartnTransfVector3();
case "Cartn_transform_axes":
return getCartnTransformAxes();
case "fract_transf_matrix[1][1]":
return getFractTransfMatrix11();
case "fract_transf_matrix[1][2]":
return getFractTransfMatrix12();
case "fract_transf_matrix[1][3]":
return getFractTransfMatrix13();
case "fract_transf_matrix[2][1]":
return getFractTransfMatrix21();
case "fract_transf_matrix[2][2]":
return getFractTransfMatrix22();
case "fract_transf_matrix[2][3]":
return getFractTransfMatrix23();
case "fract_transf_matrix[3][1]":
return getFractTransfMatrix31();
case "fract_transf_matrix[3][2]":
return getFractTransfMatrix32();
case "fract_transf_matrix[3][3]":
return getFractTransfMatrix33();
case "fract_transf_vector[1]":
return getFractTransfVector1();
case "fract_transf_vector[2]":
return getFractTransfVector2();
case "fract_transf_vector[3]":
return getFractTransfVector3();
case "solution_primary":
return getSolutionPrimary();
case "solution_secondary":
return getSolutionSecondary();
case "solution_hydrogens":
return getSolutionHydrogens();
case "special_details":
return getSpecialDetails();
default:
return new DelegatingColumn(column);
}
}
/**
* This data item is a pointer to _entry.id in the ENTRY category.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix11() {
return delegate.getColumn("Cartn_transf_matrix[1][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix12() {
return delegate.getColumn("Cartn_transf_matrix[1][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix13() {
return delegate.getColumn("Cartn_transf_matrix[1][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix21() {
return delegate.getColumn("Cartn_transf_matrix[2][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix22() {
return delegate.getColumn("Cartn_transf_matrix[2][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix23() {
return delegate.getColumn("Cartn_transf_matrix[2][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix31() {
return delegate.getColumn("Cartn_transf_matrix[3][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix32() {
return delegate.getColumn("Cartn_transf_matrix[3][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.Cartn_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfMatrix33() {
return delegate.getColumn("Cartn_transf_matrix[3][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The rotation matrix is defined in
* _atom_sites.Cartn_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfVector1() {
return delegate.getColumn("Cartn_transf_vector[1]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The rotation matrix is defined in
* _atom_sites.Cartn_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfVector2() {
return delegate.getColumn("Cartn_transf_vector[2]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* fractional coordinates in the ATOM_SITE category to Cartesian
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The rotation matrix is defined in
* _atom_sites.Cartn_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getCartnTransfVector3() {
return delegate.getColumn("Cartn_transf_vector[3]", DelegatingFloatColumn::new);
}
/**
* A description of the relative alignment of the crystal cell
* axes to the Cartesian orthogonal axes as applied in the
* transformation matrix _atom_sites.Cartn_transf_matrix[][].
* @return StrColumn
*/
public StrColumn getCartnTransformAxes() {
return delegate.getColumn("Cartn_transform_axes", DelegatingStrColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix11() {
return delegate.getColumn("fract_transf_matrix[1][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix12() {
return delegate.getColumn("fract_transf_matrix[1][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix13() {
return delegate.getColumn("fract_transf_matrix[1][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix21() {
return delegate.getColumn("fract_transf_matrix[2][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix22() {
return delegate.getColumn("fract_transf_matrix[2][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix23() {
return delegate.getColumn("fract_transf_matrix[2][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix31() {
return delegate.getColumn("fract_transf_matrix[3][1]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix32() {
return delegate.getColumn("fract_transf_matrix[3][2]", DelegatingFloatColumn::new);
}
/**
* The elements of the 3x3 matrix used to transform Cartesian
* coordinates in the ATOM_SITE category to fractional coordinates
* in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x1 translation is defined in
* _atom_sites.fract_transf_vector[].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfMatrix33() {
return delegate.getColumn("fract_transf_matrix[3][3]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* Cartesian coordinates in the ATOM_SITE category to fractional
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x3 rotation is defined in
* _atom_sites.fract_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfVector1() {
return delegate.getColumn("fract_transf_vector[1]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* Cartesian coordinates in the ATOM_SITE category to fractional
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x3 rotation is defined in
* _atom_sites.fract_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfVector2() {
return delegate.getColumn("fract_transf_vector[2]", DelegatingFloatColumn::new);
}
/**
* The elements of the three-element vector used to transform
* Cartesian coordinates in the ATOM_SITE category to fractional
* coordinates in the same category. The axial alignments of this
* transformation are described in _atom_sites.Cartn_transform_axes.
* The 3x3 rotation is defined in
* _atom_sites.fract_transf_matrix[][].
*
* |x'| |11 12 13| |x| |1|
* |y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
* |z'| |31 32 33| |z| |3|
* @return FloatColumn
*/
public FloatColumn getFractTransfVector3() {
return delegate.getColumn("fract_transf_vector[3]", DelegatingFloatColumn::new);
}
/**
* This code identifies the method used to locate the initial
* atom sites.
*
* *** This data item would not in general be used in a
* macromolecular data block. ***
* @return StrColumn
*/
public StrColumn getSolutionPrimary() {
return delegate.getColumn("solution_primary", DelegatingStrColumn::new);
}
/**
* This code identifies the method used to locate the
* non-hydrogen-atom sites not found by
* _atom_sites.solution_primary.
*
* *** This data item would not in general be used in a
* macromolecular data block. ***
* @return StrColumn
*/
public StrColumn getSolutionSecondary() {
return delegate.getColumn("solution_secondary", DelegatingStrColumn::new);
}
/**
* This code identifies the method used to locate the
* hydrogen atoms.
*
* *** This data item would not in general be used in a
* macromolecular data block. ***
* @return StrColumn
*/
public StrColumn getSolutionHydrogens() {
return delegate.getColumn("solution_hydrogens", DelegatingStrColumn::new);
}
/**
* Additional information about the atomic coordinates not coded
* elsewhere in the CIF.
* @return StrColumn
*/
public StrColumn getSpecialDetails() {
return delegate.getColumn("special_details", DelegatingStrColumn::new);
}
}
