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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the CHEM_COMP category give details about each
* of the chemical components from which the relevant chemical
* structures can be constructed, such as name, mass or charge.
*
* The related categories CHEM_COMP_ATOM, CHEM_COMP_BOND,
* CHEM_COMP_ANGLE etc. describe the detailed geometry of these
* chemical components.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class ChemComp extends DelegatingCategory {
public ChemComp(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "formula":
return getFormula();
case "formula_weight":
return getFormulaWeight();
case "id":
return getId();
case "model_details":
return getModelDetails();
case "model_erf":
return getModelErf();
case "model_source":
return getModelSource();
case "mon_nstd_class":
return getMonNstdClass();
case "mon_nstd_details":
return getMonNstdDetails();
case "mon_nstd_flag":
return getMonNstdFlag();
case "mon_nstd_parent":
return getMonNstdParent();
case "mon_nstd_parent_comp_id":
return getMonNstdParentCompId();
case "name":
return getName();
case "number_atoms_all":
return getNumberAtomsAll();
case "number_atoms_nh":
return getNumberAtomsNh();
case "one_letter_code":
return getOneLetterCode();
case "three_letter_code":
return getThreeLetterCode();
case "type":
return getType();
case "pdbx_synonyms":
return getPdbxSynonyms();
case "pdbx_modification_details":
return getPdbxModificationDetails();
case "pdbx_component_no":
return getPdbxComponentNo();
case "pdbx_type":
return getPdbxType();
case "pdbx_ambiguous_flag":
return getPdbxAmbiguousFlag();
case "pdbx_replaced_by":
return getPdbxReplacedBy();
case "pdbx_replaces":
return getPdbxReplaces();
case "pdbx_formal_charge":
return getPdbxFormalCharge();
case "pdbx_subcomponent_list":
return getPdbxSubcomponentList();
case "pdbx_model_coordinates_details":
return getPdbxModelCoordinatesDetails();
case "pdbx_model_coordinates_db_code":
return getPdbxModelCoordinatesDbCode();
case "pdbx_ideal_coordinates_details":
return getPdbxIdealCoordinatesDetails();
case "pdbx_ideal_coordinates_missing_flag":
return getPdbxIdealCoordinatesMissingFlag();
case "pdbx_model_coordinates_missing_flag":
return getPdbxModelCoordinatesMissingFlag();
case "pdbx_initial_date":
return getPdbxInitialDate();
case "pdbx_modified_date":
return getPdbxModifiedDate();
case "pdbx_release_status":
return getPdbxReleaseStatus();
case "pdbx_processing_site":
return getPdbxProcessingSite();
case "pdbx_number_subcomponents":
return getPdbxNumberSubcomponents();
case "pdbx_class_1":
return getPdbxClass1();
case "pdbx_class_2":
return getPdbxClass2();
case "pdbx_comp_type":
return getPdbxCompType();
case "pdbx_reserved_name":
return getPdbxReservedName();
case "pdbx_status":
return getPdbxStatus();
case "pdbx_type_modified":
return getPdbxTypeModified();
case "pdbx_casnum":
return getPdbxCasnum();
case "pdbx_smiles":
return getPdbxSmiles();
case "pdbx_nscnum":
return getPdbxNscnum();
case "ma_provenance":
return getMaProvenance();
default:
return new DelegatingColumn(column);
}
}
/**
* The formula for the chemical component. Formulae are written
* according to the following rules:
*
* (1) Only recognized element symbols may be used.
*
* (2) Each element symbol is followed by a 'count' number. A count
* of '1' may be omitted.
*
* (3) A space or parenthesis must separate each cluster of
* (element symbol + count), but in general parentheses are
* not used.
*
* (4) The order of elements depends on whether carbon is
* present or not. If carbon is present, the order should be:
* C, then H, then the other elements in alphabetical order
* of their symbol. If carbon is not present, the elements
* are listed purely in alphabetic order of their symbol. This
* is the 'Hill' system used by Chemical Abstracts.
* @return StrColumn
*/
public StrColumn getFormula() {
return delegate.getColumn("formula", DelegatingStrColumn::new);
}
/**
* Formula mass in daltons of the chemical component.
* @return FloatColumn
*/
public FloatColumn getFormulaWeight() {
return delegate.getColumn("formula_weight", DelegatingFloatColumn::new);
}
/**
* The value of _chem_comp.id must uniquely identify each item in
* the CHEM_COMP list.
*
* For protein polymer entities, this is the three-letter code for
* the amino acid.
*
* For nucleic acid polymer entities, this is the one-letter code
* for the base.
* @return StrColumn
*/
public StrColumn getId() {
return delegate.getColumn("id", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the generation of the
* coordinates for the model of the component.
* @return StrColumn
*/
public StrColumn getModelDetails() {
return delegate.getColumn("model_details", DelegatingStrColumn::new);
}
/**
* A pointer to an external reference file from which the atomic
* description of the component is taken.
* @return StrColumn
*/
public StrColumn getModelErf() {
return delegate.getColumn("model_erf", DelegatingStrColumn::new);
}
/**
* The source of the coordinates for the model of the component.
* @return StrColumn
*/
public StrColumn getModelSource() {
return delegate.getColumn("model_source", DelegatingStrColumn::new);
}
/**
* A description of the class of a nonstandard monomer if the
* nonstandard monomer represents a modification of a
* standard monomer.
* @return StrColumn
*/
public StrColumn getMonNstdClass() {
return delegate.getColumn("mon_nstd_class", DelegatingStrColumn::new);
}
/**
* A description of special details of a nonstandard monomer.
* @return StrColumn
*/
public StrColumn getMonNstdDetails() {
return delegate.getColumn("mon_nstd_details", DelegatingStrColumn::new);
}
/**
* 'yes' indicates that this is a 'standard' monomer, 'no'
* indicates that it is 'nonstandard'. Nonstandard monomers
* should be described in more detail using the
* _chem_comp.mon_nstd_parent, _chem_comp.mon_nstd_class and
* _chem_comp.mon_nstd_details data items.
* @return StrColumn
*/
public StrColumn getMonNstdFlag() {
return delegate.getColumn("mon_nstd_flag", DelegatingStrColumn::new);
}
/**
* The name of the parent monomer of the nonstandard monomer,
* if the nonstandard monomer represents a modification of a
* standard monomer.
* @return StrColumn
*/
public StrColumn getMonNstdParent() {
return delegate.getColumn("mon_nstd_parent", DelegatingStrColumn::new);
}
/**
* The identifier for the parent component of the nonstandard
* component. May be be a comma separated list if this component
* is derived from multiple components.
*
* Items in this indirectly point to _chem_comp.id in
* the CHEM_COMP category.
* @return StrColumn
*/
public StrColumn getMonNstdParentCompId() {
return delegate.getColumn("mon_nstd_parent_comp_id", DelegatingStrColumn::new);
}
/**
* The full name of the component.
* @return StrColumn
*/
public StrColumn getName() {
return delegate.getColumn("name", DelegatingStrColumn::new);
}
/**
* The total number of atoms in the component.
* @return IntColumn
*/
public IntColumn getNumberAtomsAll() {
return delegate.getColumn("number_atoms_all", DelegatingIntColumn::new);
}
/**
* The number of non-hydrogen atoms in the component.
* @return IntColumn
*/
public IntColumn getNumberAtomsNh() {
return delegate.getColumn("number_atoms_nh", DelegatingIntColumn::new);
}
/**
* For standard polymer components, the one-letter code for
* the component. For non-standard polymer components, the
* one-letter code for parent component if this exists;
* otherwise, the one-letter code should be given as 'X'.
*
* Components that derived from multiple parents components
* are described by a sequence of one-letter-codes.
* @return StrColumn
*/
public StrColumn getOneLetterCode() {
return delegate.getColumn("one_letter_code", DelegatingStrColumn::new);
}
/**
* For standard polymer components, the common three-letter code for
* the component. Non-standard polymer components and non-polymer
* components are also assigned three-letter-codes.
*
* For ambiguous polymer components three-letter code should
* be given as 'UNK'. Ambiguous ions are assigned the code 'UNX'.
* Ambiguous non-polymer components are assigned the code 'UNL'.
* @return StrColumn
*/
public StrColumn getThreeLetterCode() {
return delegate.getColumn("three_letter_code", DelegatingStrColumn::new);
}
/**
* For standard polymer components, the type of the monomer.
* Note that monomers that will form polymers are of three types:
* linking monomers, monomers with some type of N-terminal (or 5')
* cap and monomers with some type of C-terminal (or 3') cap.
* @return StrColumn
*/
public StrColumn getType() {
return delegate.getColumn("type", DelegatingStrColumn::new);
}
/**
* Synonym list for the component.
* @return StrColumn
*/
public StrColumn getPdbxSynonyms() {
return delegate.getColumn("pdbx_synonyms", DelegatingStrColumn::new);
}
/**
* For nonstandard components a text description
* of modification of the parent component.
* @return StrColumn
*/
public StrColumn getPdbxModificationDetails() {
return delegate.getColumn("pdbx_modification_details", DelegatingStrColumn::new);
}
/**
* A serial number used by PDB in the FORMUL record.
* @return IntColumn
*/
public IntColumn getPdbxComponentNo() {
return delegate.getColumn("pdbx_component_no", DelegatingIntColumn::new);
}
/**
* A preliminary classification used by PDB.
* @return StrColumn
*/
public StrColumn getPdbxType() {
return delegate.getColumn("pdbx_type", DelegatingStrColumn::new);
}
/**
* A preliminary classification used by PDB to indicate
* that the chemistry of this component while described
* as clearly as possible is still ambiguous. Software
* tools may not be able to process this component
* definition.
* @return StrColumn
*/
public StrColumn getPdbxAmbiguousFlag() {
return delegate.getColumn("pdbx_ambiguous_flag", DelegatingStrColumn::new);
}
/**
* Identifies the _chem_comp.id of the component that
* has replaced this component.
* @return StrColumn
*/
public StrColumn getPdbxReplacedBy() {
return delegate.getColumn("pdbx_replaced_by", DelegatingStrColumn::new);
}
/**
* Identifies the _chem_comp.id's of the components
* which have been replaced by this component.
* Multiple id codes should be separated by commas.
* @return StrColumn
*/
public StrColumn getPdbxReplaces() {
return delegate.getColumn("pdbx_replaces", DelegatingStrColumn::new);
}
/**
* The net integer charge assigned to this component. This is the
* formal charge assignment normally found in chemical diagrams.
* @return IntColumn
*/
public IntColumn getPdbxFormalCharge() {
return delegate.getColumn("pdbx_formal_charge", DelegatingIntColumn::new);
}
/**
* The list of subcomponents contained in this component.
* @return StrColumn
*/
public StrColumn getPdbxSubcomponentList() {
return delegate.getColumn("pdbx_subcomponent_list", DelegatingStrColumn::new);
}
/**
* This data item provides additional details about the model coordinates
* in the component definition.
* @return StrColumn
*/
public StrColumn getPdbxModelCoordinatesDetails() {
return delegate.getColumn("pdbx_model_coordinates_details", DelegatingStrColumn::new);
}
/**
* This data item identifies the PDB database code from which the heavy
* atom model coordinates were obtained.
* @return StrColumn
*/
public StrColumn getPdbxModelCoordinatesDbCode() {
return delegate.getColumn("pdbx_model_coordinates_db_code", DelegatingStrColumn::new);
}
/**
* This data item identifies the source of the ideal coordinates in the
* component definition.
* @return StrColumn
*/
public StrColumn getPdbxIdealCoordinatesDetails() {
return delegate.getColumn("pdbx_ideal_coordinates_details", DelegatingStrColumn::new);
}
/**
* This data item identifies if ideal coordinates are missing in this definition.
* @return StrColumn
*/
public StrColumn getPdbxIdealCoordinatesMissingFlag() {
return delegate.getColumn("pdbx_ideal_coordinates_missing_flag", DelegatingStrColumn::new);
}
/**
* This data item identifies if model coordinates are missing in this definition.
* @return StrColumn
*/
public StrColumn getPdbxModelCoordinatesMissingFlag() {
return delegate.getColumn("pdbx_model_coordinates_missing_flag", DelegatingStrColumn::new);
}
/**
* Date component was added to database.
* @return StrColumn
*/
public StrColumn getPdbxInitialDate() {
return delegate.getColumn("pdbx_initial_date", DelegatingStrColumn::new);
}
/**
* Date component was last modified.
* @return StrColumn
*/
public StrColumn getPdbxModifiedDate() {
return delegate.getColumn("pdbx_modified_date", DelegatingStrColumn::new);
}
/**
* This data item holds the current release status for the component.
* @return StrColumn
*/
public StrColumn getPdbxReleaseStatus() {
return delegate.getColumn("pdbx_release_status", DelegatingStrColumn::new);
}
/**
* This data item identifies the deposition site that processed
* this chemical component defintion.
* @return StrColumn
*/
public StrColumn getPdbxProcessingSite() {
return delegate.getColumn("pdbx_processing_site", DelegatingStrColumn::new);
}
/**
* The number of subcomponents represented in this component.
* @return IntColumn
*/
public IntColumn getPdbxNumberSubcomponents() {
return delegate.getColumn("pdbx_number_subcomponents", DelegatingIntColumn::new);
}
/**
* Internal classifier used to organize ligand
* dictionary (broad chemical class).
* @return StrColumn
*/
public StrColumn getPdbxClass1() {
return delegate.getColumn("pdbx_class_1", DelegatingStrColumn::new);
}
/**
* Internal classifier used to organize ligand
* dictionary (notable chemical features).
* @return StrColumn
*/
public StrColumn getPdbxClass2() {
return delegate.getColumn("pdbx_class_2", DelegatingStrColumn::new);
}
/**
* A type classification of this chemical component.
* @return StrColumn
*/
public StrColumn getPdbxCompType() {
return delegate.getColumn("pdbx_comp_type", DelegatingStrColumn::new);
}
/**
* Previous chemical name used for this component if
* a name correction has been made.
* @return StrColumn
*/
public StrColumn getPdbxReservedName() {
return delegate.getColumn("pdbx_reserved_name", DelegatingStrColumn::new);
}
/**
* Release status of component
* @return StrColumn
*/
public StrColumn getPdbxStatus() {
return delegate.getColumn("pdbx_status", DelegatingStrColumn::new);
}
/**
* Modification flag.
* @return IntColumn
*/
public IntColumn getPdbxTypeModified() {
return delegate.getColumn("pdbx_type_modified", DelegatingIntColumn::new);
}
/**
* Chemical Abstract Service identifier.
* @return StrColumn
*/
public StrColumn getPdbxCasnum() {
return delegate.getColumn("pdbx_casnum", DelegatingStrColumn::new);
}
/**
* SMILES code for component.
* @return StrColumn
*/
public StrColumn getPdbxSmiles() {
return delegate.getColumn("pdbx_smiles", DelegatingStrColumn::new);
}
/**
* NSC identifier for component.
* @return StrColumn
*/
public StrColumn getPdbxNscnum() {
return delegate.getColumn("pdbx_nscnum", DelegatingStrColumn::new);
}
/**
* The provenance information for the chemical component definition.
* @return StrColumn
*/
public StrColumn getMaProvenance() {
return delegate.getColumn("ma_provenance", DelegatingStrColumn::new);
}
}
