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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the EMD_MAP category record parameters of the CCP4 binary-format map file header
* (see ftp://ftp.wwpdb.org/pub/emdb/doc/map_format/EMDB_mapFormat_v1.0.pdf),
* parameters derived from the map header, pixel size, contour level, and annotation details from the depositor.
* The map is a three-dimensional array of data-values of the same data-type.
* Important parameters are data-type and array size in three dimensions
* (i.e. the number of columns, rows and sections).
* Columns are the fastest changing, followed by rows and sections.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EmMap extends DelegatingCategory {
public EmMap(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "annotation_details":
return getAnnotationDetails();
case "axis_order_fast":
return getAxisOrderFast();
case "axis_order_medium":
return getAxisOrderMedium();
case "axis_order_slow":
return getAxisOrderSlow();
case "cell_a":
return getCellA();
case "cell_b":
return getCellB();
case "cell_c":
return getCellC();
case "cell_alpha":
return getCellAlpha();
case "cell_beta":
return getCellBeta();
case "cell_gamma":
return getCellGamma();
case "contour_level":
return getContourLevel();
case "contour_level_source":
return getContourLevelSource();
case "data_type":
return getDataType();
case "dimensions_col":
return getDimensionsCol();
case "dimensions_row":
return getDimensionsRow();
case "dimensions_sec":
return getDimensionsSec();
case "endian_type":
return getEndianType();
case "file":
return getFile();
case "original_file":
return getOriginalFile();
case "format":
return getFormat();
case "id":
return getId();
case "partition":
return getPartition();
case "entry_id":
return getEntryId();
case "label":
return getLabel();
case "limit_col":
return getLimitCol();
case "limit_row":
return getLimitRow();
case "limit_sec":
return getLimitSec();
case "origin_col":
return getOriginCol();
case "origin_row":
return getOriginRow();
case "origin_sec":
return getOriginSec();
case "pixel_spacing_x":
return getPixelSpacingX();
case "pixel_spacing_y":
return getPixelSpacingY();
case "pixel_spacing_z":
return getPixelSpacingZ();
case "size_kb":
return getSizeKb();
case "spacing_x":
return getSpacingX();
case "spacing_y":
return getSpacingY();
case "spacing_z":
return getSpacingZ();
case "statistics_average":
return getStatisticsAverage();
case "statistics_maximum":
return getStatisticsMaximum();
case "statistics_minimum":
return getStatisticsMinimum();
case "statistics_std":
return getStatisticsStd();
case "symmetry_space_group":
return getSymmetrySpaceGroup();
case "type":
return getType();
default:
return new DelegatingColumn(column);
}
}
/**
* map annotation details
* @return StrColumn
*/
public StrColumn getAnnotationDetails() {
return delegate.getColumn("annotation_details", DelegatingStrColumn::new);
}
/**
* The map axis that corresponds to Columns.
* (CCP4 HEADER WORD 17 MAPC 1=x, 2=y, 3=z)
* @return StrColumn
*/
public StrColumn getAxisOrderFast() {
return delegate.getColumn("axis_order_fast", DelegatingStrColumn::new);
}
/**
* The map axis that corresponds to Rows.
* (CCP4 map header word 18 MAPR 1=x, 2=y, 3=z)
* @return StrColumn
*/
public StrColumn getAxisOrderMedium() {
return delegate.getColumn("axis_order_medium", DelegatingStrColumn::new);
}
/**
* The map axis that corresponds to Sections.
* (CCP4 map header word 19 MAPS 1=x, 2=y, 3=z)
* @return StrColumn
*/
public StrColumn getAxisOrderSlow() {
return delegate.getColumn("axis_order_slow", DelegatingStrColumn::new);
}
/**
* Map unit cell length parameter a.
* (CCP4 map header word 11)
* @return FloatColumn
*/
public FloatColumn getCellA() {
return delegate.getColumn("cell_a", DelegatingFloatColumn::new);
}
/**
* Map unit cell length parameter b.
* (CCP4 map header word 12)
* @return FloatColumn
*/
public FloatColumn getCellB() {
return delegate.getColumn("cell_b", DelegatingFloatColumn::new);
}
/**
* Map unit cell length parameter c.
* (CCP4 map header word 13)
* @return FloatColumn
*/
public FloatColumn getCellC() {
return delegate.getColumn("cell_c", DelegatingFloatColumn::new);
}
/**
* Value of map unit cell angle parameter alpha in degrees.
* (CCP4 map header word 14)
* @return FloatColumn
*/
public FloatColumn getCellAlpha() {
return delegate.getColumn("cell_alpha", DelegatingFloatColumn::new);
}
/**
* Value of map unit cell angle parameter beta in degrees.
* (CCP4 map header word 15)
* @return FloatColumn
*/
public FloatColumn getCellBeta() {
return delegate.getColumn("cell_beta", DelegatingFloatColumn::new);
}
/**
* Value of map unit cell angle parameter gamma in degrees.
* (CCP4 map header word 16)
* @return FloatColumn
*/
public FloatColumn getCellGamma() {
return delegate.getColumn("cell_gamma", DelegatingFloatColumn::new);
}
/**
* recommended contour level for viewing the map
* @return FloatColumn
*/
public FloatColumn getContourLevel() {
return delegate.getColumn("contour_level", DelegatingFloatColumn::new);
}
/**
* source of the recommended contour level
* @return StrColumn
*/
public StrColumn getContourLevelSource() {
return delegate.getColumn("contour_level_source", DelegatingStrColumn::new);
}
/**
* The map data_type describes the data structure of the map voxels.
* (CCP4 map header word 4 MODE)
* EMDB currently holds MODE=0,1,and 2 maps; the majority are MODE=2.
* MAPS with MODES other than 2 and 0 may not work in CCP4 programs.
* MODE = 0: 8 bits, density stored as a signed byte (-128 to 127, ISO/IEC 10967)
* MODE = 1: 16 bits, density stored as a signed integer (-32768 to 32767, ISO/IEC 10967)
* MODE = 2: 32 bits, density stored as a floating point number (IEEE 754)
* @return StrColumn
*/
public StrColumn getDataType() {
return delegate.getColumn("data_type", DelegatingStrColumn::new);
}
/**
* The number of columns in the map.
* (CCP4 map header word 1 NC)
* @return IntColumn
*/
public IntColumn getDimensionsCol() {
return delegate.getColumn("dimensions_col", DelegatingIntColumn::new);
}
/**
* The number of rows in the map.
* (CCP4 map header word 2 NR)
* @return IntColumn
*/
public IntColumn getDimensionsRow() {
return delegate.getColumn("dimensions_row", DelegatingIntColumn::new);
}
/**
* The number of sections in the map.
* (CCP4 map header word 3 NS)
* @return IntColumn
*/
public IntColumn getDimensionsSec() {
return delegate.getColumn("dimensions_sec", DelegatingIntColumn::new);
}
/**
* map file endian type
* @return StrColumn
*/
public StrColumn getEndianType() {
return delegate.getColumn("endian_type", DelegatingStrColumn::new);
}
/**
* Map file name.
* @return StrColumn
*/
public StrColumn getFile() {
return delegate.getColumn("file", DelegatingStrColumn::new);
}
/**
* Depositiors original map file name.
* @return StrColumn
*/
public StrColumn getOriginalFile() {
return delegate.getColumn("original_file", DelegatingStrColumn::new);
}
/**
* map format
* @return StrColumn
*/
public StrColumn getFormat() {
return delegate.getColumn("format", DelegatingStrColumn::new);
}
/**
* PRIMARY KEY
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* Identifies the archive file partition number of any map file
* @return IntColumn
*/
public IntColumn getPartition() {
return delegate.getColumn("partition", DelegatingIntColumn::new);
}
/**
* This data item is a pointer to the ENTRY category.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* text stored in the label field of the CCP4 map header
* (WORDS 57-256)
* @return StrColumn
*/
public StrColumn getLabel() {
return delegate.getColumn("label", DelegatingStrColumn::new);
}
/**
* The final column position of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (derived = .origin_col + .dimensions_col -1)
* @return IntColumn
*/
public IntColumn getLimitCol() {
return delegate.getColumn("limit_col", DelegatingIntColumn::new);
}
/**
* The final row position of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (derived = .origin_row + .dimensions_row -1)
* @return IntColumn
*/
public IntColumn getLimitRow() {
return delegate.getColumn("limit_row", DelegatingIntColumn::new);
}
/**
* The final section position of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (derived -- .origin_sec + .dimensions_sec -1)
* @return IntColumn
*/
public IntColumn getLimitSec() {
return delegate.getColumn("limit_sec", DelegatingIntColumn::new);
}
/**
* The position of the first column of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (CCP4 map header word 5 NCSTART)
* @return IntColumn
*/
public IntColumn getOriginCol() {
return delegate.getColumn("origin_col", DelegatingIntColumn::new);
}
/**
* The position of the first row of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (CCP4 map header word 6 NRSTART)
* @return IntColumn
*/
public IntColumn getOriginRow() {
return delegate.getColumn("origin_row", DelegatingIntColumn::new);
}
/**
* The position of the first section of the map relative to the
* Cartesian coordinate origin in voxel grid units.
* (CCP4 map header word 7 NSSTART)
* @return IntColumn
*/
public IntColumn getOriginSec() {
return delegate.getColumn("origin_sec", DelegatingIntColumn::new);
}
/**
* The length in angstroms of one voxel along the X axis.
* @return FloatColumn
*/
public FloatColumn getPixelSpacingX() {
return delegate.getColumn("pixel_spacing_x", DelegatingFloatColumn::new);
}
/**
* The length in angstroms of one voxel along the Y axis.
* @return FloatColumn
*/
public FloatColumn getPixelSpacingY() {
return delegate.getColumn("pixel_spacing_y", DelegatingFloatColumn::new);
}
/**
* The length in angstroms of one voxel along the Z axis.
* @return FloatColumn
*/
public FloatColumn getPixelSpacingZ() {
return delegate.getColumn("pixel_spacing_z", DelegatingFloatColumn::new);
}
/**
* map storage size in Kilobytes (before compression)
* @return IntColumn
*/
public IntColumn getSizeKb() {
return delegate.getColumn("size_kb", DelegatingIntColumn::new);
}
/**
* The number of intervals per cell repeat in X.
* (CCP4 map header word 8 NX)
* @return IntColumn
*/
public IntColumn getSpacingX() {
return delegate.getColumn("spacing_x", DelegatingIntColumn::new);
}
/**
* The number of intervals per cell repeat in Y.
* (CCP4 map header word 9 NY)
* @return IntColumn
*/
public IntColumn getSpacingY() {
return delegate.getColumn("spacing_y", DelegatingIntColumn::new);
}
/**
* The number of intervals per cell repeat in Z.
* (CCP4 map header word 10 NZ)
* @return IntColumn
*/
public IntColumn getSpacingZ() {
return delegate.getColumn("spacing_z", DelegatingIntColumn::new);
}
/**
* Mean (average) density value of the map.
* @return FloatColumn
*/
public FloatColumn getStatisticsAverage() {
return delegate.getColumn("statistics_average", DelegatingFloatColumn::new);
}
/**
* Maximum density value of the map.
* @return FloatColumn
*/
public FloatColumn getStatisticsMaximum() {
return delegate.getColumn("statistics_maximum", DelegatingFloatColumn::new);
}
/**
* Minimum density value of the map.
* @return FloatColumn
*/
public FloatColumn getStatisticsMinimum() {
return delegate.getColumn("statistics_minimum", DelegatingFloatColumn::new);
}
/**
* The standard deviation of the map density values.
* @return FloatColumn
*/
public FloatColumn getStatisticsStd() {
return delegate.getColumn("statistics_std", DelegatingFloatColumn::new);
}
/**
* The space group number for the map.
* The value is 1 unless the sample is crystalline.
* (CCP4 map header word 23 ISPG)
* @return IntColumn
*/
public IntColumn getSymmetrySpaceGroup() {
return delegate.getColumn("symmetry_space_group", DelegatingIntColumn::new);
}
/**
* Map type
* @return StrColumn
*/
public StrColumn getType() {
return delegate.getColumn("type", DelegatingStrColumn::new);
}
}
