Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance. Project price only 1 $
You can buy this project and download/modify it how often you want.
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the ENTITY_POLY category record details about the
* polymer, such as the type of the polymer, the number of
* monomers and whether it has nonstandard features.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EntityPoly extends DelegatingCategory {
public EntityPoly(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entity_id":
return getEntityId();
case "nstd_chirality":
return getNstdChirality();
case "nstd_linkage":
return getNstdLinkage();
case "nstd_monomer":
return getNstdMonomer();
case "number_of_monomers":
return getNumberOfMonomers();
case "type":
return getType();
case "type_details":
return getTypeDetails();
case "pdbx_strand_id":
return getPdbxStrandId();
case "pdbx_seq_one_letter_code":
return getPdbxSeqOneLetterCode();
case "pdbx_seq_one_letter_code_can":
return getPdbxSeqOneLetterCodeCan();
case "pdbx_target_identifier":
return getPdbxTargetIdentifier();
case "pdbx_seq_one_letter_code_sample":
return getPdbxSeqOneLetterCodeSample();
case "pdbx_explicit_linking_flag":
return getPdbxExplicitLinkingFlag();
case "pdbx_sequence_evidence_code":
return getPdbxSequenceEvidenceCode();
case "pdbx_build_self_reference":
return getPdbxBuildSelfReference();
case "pdbx_N_terminal_seq_one_letter_code":
return getPdbxNTerminalSeqOneLetterCode();
case "pdbx_C_terminal_seq_one_letter_code":
return getPdbxCTerminalSeqOneLetterCode();
case "pdbx_seq_three_letter_code":
return getPdbxSeqThreeLetterCode();
case "pdbx_seq_db_name":
return getPdbxSeqDbName();
case "pdbx_seq_db_id":
return getPdbxSeqDbId();
case "pdbx_seq_align_begin":
return getPdbxSeqAlignBegin();
case "pdbx_seq_align_end":
return getPdbxSeqAlignEnd();
default:
return new DelegatingColumn(column);
}
}
/**
* This data item is a pointer to _entity.id in the ENTITY category.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* A flag to indicate whether the polymer contains at least
* one monomer unit with chirality different from that specified in
* _entity_poly.type.
* @return StrColumn
*/
public StrColumn getNstdChirality() {
return delegate.getColumn("nstd_chirality", DelegatingStrColumn::new);
}
/**
* A flag to indicate whether the polymer contains at least
* one monomer-to-monomer link different from that implied by
* _entity_poly.type.
* @return StrColumn
*/
public StrColumn getNstdLinkage() {
return delegate.getColumn("nstd_linkage", DelegatingStrColumn::new);
}
/**
* A flag to indicate whether the polymer contains at least
* one monomer that is not considered standard.
* @return StrColumn
*/
public StrColumn getNstdMonomer() {
return delegate.getColumn("nstd_monomer", DelegatingStrColumn::new);
}
/**
* The number of monomers in the polymer.
* @return IntColumn
*/
public IntColumn getNumberOfMonomers() {
return delegate.getColumn("number_of_monomers", DelegatingIntColumn::new);
}
/**
* The type of the polymer.
* @return StrColumn
*/
public StrColumn getType() {
return delegate.getColumn("type", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the polymer type.
* @return StrColumn
*/
public StrColumn getTypeDetails() {
return delegate.getColumn("type_details", DelegatingStrColumn::new);
}
/**
* The PDB strand/chain id(s) corresponding to this polymer entity.
* @return StrColumn
*/
public StrColumn getPdbxStrandId() {
return delegate.getColumn("pdbx_strand_id", DelegatingStrColumn::new);
}
/**
* Sequence of protein or nucleic acid polymer in standard one-letter
* codes of amino acids or nucleotides. Non-standard amino
* acids/nucleotides are represented by their Chemical
* Component Dictionary (CCD) codes in
* parenthesis. Deoxynucleotides are represented by the
* specially-assigned 2-letter CCD codes in parenthesis,
* with 'D' prefix added to their ribonucleotide
* counterparts. For hybrid polymer, each residue is
* represented by the code of its individual type. A
* cyclic polymer is represented in linear sequence from
* the chosen start to end.
*
* A for Alanine or Adenosine-5'-monophosphate
* C for Cysteine or Cytidine-5'-monophosphate
* D for Aspartic acid
* E for Glutamic acid
* F for Phenylalanine
* G for Glycine or Guanosine-5'-monophosphate
* H for Histidine
* I for Isoleucine or Inosinic Acid
* L for Leucine
* K for Lysine
* M for Methionine
* N for Asparagine or Unknown ribonucleotide
* O for Pyrrolysine
* P for Proline
* Q for Glutamine
* R for Arginine
* S for Serine
* T for Threonine
* U for Selenocysteine or Uridine-5'-monophosphate
* V for Valine
* W for Tryptophan
* Y for Tyrosine
* (DA) for 2'-deoxyadenosine-5'-monophosphate
* (DC) for 2'-deoxycytidine-5'-monophosphate
* (DG) for 2'-deoxyguanosine-5'-monophosphate
* (DT) for Thymidine-5'-monophosphate
* (MSE) for Selenomethionine
* (SEP) for Phosphoserine
* (PTO) for Phosphothreonine
* (PTR) for Phosphotyrosine
* (PCA) for Pyroglutamic acid
* (UNK) for Unknown amino acid
* (ACE) for Acetylation cap
* (NH2) for Amidation cap
* @return StrColumn
*/
public StrColumn getPdbxSeqOneLetterCode() {
return delegate.getColumn("pdbx_seq_one_letter_code", DelegatingStrColumn::new);
}
/**
* Canonical sequence of protein or nucleic acid polymer in standard
* one-letter codes of amino acids or nucleotides,
* corresponding to the sequence in
* _entity_poly.pdbx_seq_one_letter_code. Non-standard
* amino acids/nucleotides are represented by the codes of
* their parents if parent is specified in
* _chem_comp.mon_nstd_parent_comp_id, or by letter 'X' if
* parent is not specified. Deoxynucleotides are
* represented by their canonical one-letter codes of A,
* C, G, or T.
*
* For modifications with several parent amino acids,
* all corresponding parent amino acid codes will be listed
* (ex. chromophores).
* @return StrColumn
*/
public StrColumn getPdbxSeqOneLetterCodeCan() {
return delegate.getColumn("pdbx_seq_one_letter_code_can", DelegatingStrColumn::new);
}
/**
* For Structural Genomics entries, the sequence's target identifier registered at the TargetTrack database.
* @return StrColumn
*/
public StrColumn getPdbxTargetIdentifier() {
return delegate.getColumn("pdbx_target_identifier", DelegatingStrColumn::new);
}
/**
* For cases in which the sample and model sequence differ this item contains
* the sample chemical sequence expressed as string of one-letter amino acid codes.
*
* Modified may be include as 'X' or with their 3-letter codes in parentheses.
* @return StrColumn
*/
public StrColumn getPdbxSeqOneLetterCodeSample() {
return delegate.getColumn("pdbx_seq_one_letter_code_sample", DelegatingStrColumn::new);
}
/**
* A flag to indicate that linking data is explicitly provided for this polymer
* in the PDBX_ENTITY_POLY_COMP_LINK_LIST category
* @return StrColumn
*/
public StrColumn getPdbxExplicitLinkingFlag() {
return delegate.getColumn("pdbx_explicit_linking_flag", DelegatingStrColumn::new);
}
/**
* Evidence for the assignment of the polymer sequence.
* @return StrColumn
*/
public StrColumn getPdbxSequenceEvidenceCode() {
return delegate.getColumn("pdbx_sequence_evidence_code", DelegatingStrColumn::new);
}
/**
* A code to indicate that this sequence should be assigned
* a PDB sequence reference.
* @return StrColumn
*/
public StrColumn getPdbxBuildSelfReference() {
return delegate.getColumn("pdbx_build_self_reference", DelegatingStrColumn::new);
}
/**
* N-terminal cloning artifacts and/or HIS tag.
* @return StrColumn
*/
public StrColumn getPdbxNTerminalSeqOneLetterCode() {
return delegate.getColumn("pdbx_N_terminal_seq_one_letter_code", DelegatingStrColumn::new);
}
/**
* C-terminal cloning artifacts and/or HIS tag.
* @return StrColumn
*/
public StrColumn getPdbxCTerminalSeqOneLetterCode() {
return delegate.getColumn("pdbx_C_terminal_seq_one_letter_code", DelegatingStrColumn::new);
}
/**
* Chemical sequence expressed as string of three-letter
* amino acid codes.
* @return StrColumn
*/
public StrColumn getPdbxSeqThreeLetterCode() {
return delegate.getColumn("pdbx_seq_three_letter_code", DelegatingStrColumn::new);
}
/**
* The name of the sequence data base containing a database entry
* for this sequence.
* @return StrColumn
*/
public StrColumn getPdbxSeqDbName() {
return delegate.getColumn("pdbx_seq_db_name", DelegatingStrColumn::new);
}
/**
* The identifier for this sequence in the sequence data base.
* @return StrColumn
*/
public StrColumn getPdbxSeqDbId() {
return delegate.getColumn("pdbx_seq_db_id", DelegatingStrColumn::new);
}
/**
* The sequence position in the database sequence at which the
* alignment with your sequence begins.
* @return IntColumn
*/
public IntColumn getPdbxSeqAlignBegin() {
return delegate.getColumn("pdbx_seq_align_begin", DelegatingIntColumn::new);
}
/**
* The sequence position in the database sequence at which the
* alignment with your sequence ends.
* @return IntColumn
*/
public IntColumn getPdbxSeqAlignEnd() {
return delegate.getColumn("pdbx_seq_align_end", DelegatingIntColumn::new);
}
}