org.rcsb.cif.schema.mm.MaAlignment Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the MA_ALIGMNENT category record details about
* the relationship between the sequences of the target and the
* structural template obtained through multiple sequence alignment
* methods. Alignments can be fully gapped or partial.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class MaAlignment extends DelegatingCategory {
public MaAlignment(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "ordinal_id":
return getOrdinalId();
case "alignment_id":
return getAlignmentId();
case "target_template_flag":
return getTargetTemplateFlag();
case "sequence":
return getSequence();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for this record.
* @return IntColumn
*/
public IntColumn getOrdinalId() {
return delegate.getColumn("ordinal_id", DelegatingIntColumn::new);
}
/**
* An identifier for the alignment.
* This data item is a pointer to _ma_alignment_details.alignment_id
* in the MA_ALIGNMENT_DETAILS category.
* @return IntColumn
*/
public IntColumn getAlignmentId() {
return delegate.getColumn("alignment_id", DelegatingIntColumn::new);
}
/**
* A flag to indicate whether the sequence corresponds to the target or a template.
* @return StrColumn
*/
public StrColumn getTargetTemplateFlag() {
return delegate.getColumn("target_template_flag", DelegatingStrColumn::new);
}
/**
* The target / template sequence in the multiple sequence alignment.
* The sequence includes gaps and is reproduced as observed in the multiple sequence alignment.
* The sequence can span multiple lines and can be expressed as a string of one-letter codes.
* @return StrColumn
*/
public StrColumn getSequence() {
return delegate.getColumn("sequence", DelegatingStrColumn::new);
}
}