org.rcsb.cif.schema.mm.MaDistanceRestraints Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the MA_DISTANCE_RESTRAINTS category records the
* list of distance restraints used in the modeling.
* These distances can be atomic or residue-wise distances.
* This has been adapted from the widely used CASP RR format
* (http://www.predictioncenter.org/casp8/index.cgi?page=format#RR).
* These distances may be derived from various coevolution MSA or other
* exeperimental or computational methods.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class MaDistanceRestraints extends DelegatingCategory {
public MaDistanceRestraints(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "ordinal_id":
return getOrdinalId();
case "restraint_id":
return getRestraintId();
case "entity_id_1":
return getEntityId1();
case "entity_id_2":
return getEntityId2();
case "asym_id_1":
return getAsymId1();
case "asym_id_2":
return getAsymId2();
case "comp_id_1":
return getCompId1();
case "comp_id_2":
return getCompId2();
case "seq_id_1":
return getSeqId1();
case "seq_id_2":
return getSeqId2();
case "atom_id_1":
return getAtomId1();
case "atom_id_2":
return getAtomId2();
case "lower_limit":
return getLowerLimit();
case "upper_limit":
return getUpperLimit();
case "lower_limit_esd":
return getLowerLimitEsd();
case "upper_limit_esd":
return getUpperLimitEsd();
case "probability":
return getProbability();
case "restraint_type":
return getRestraintType();
case "granularity":
return getGranularity();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for the distance restraint record.
* @return IntColumn
*/
public IntColumn getOrdinalId() {
return delegate.getColumn("ordinal_id", DelegatingIntColumn::new);
}
/**
* An identifier pointing to the _ma_restraints.restraint_id in the MA_RESTRAINTS category.
* @return IntColumn
*/
public IntColumn getRestraintId() {
return delegate.getColumn("restraint_id", DelegatingIntColumn::new);
}
/**
* The entity identifier for the first partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getEntityId1() {
return delegate.getColumn("entity_id_1", DelegatingStrColumn::new);
}
/**
* The entity identifier for the second partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getEntityId2() {
return delegate.getColumn("entity_id_2", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the first partner in the distance restraint.
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASY category.
* @return StrColumn
*/
public StrColumn getAsymId1() {
return delegate.getColumn("asym_id_1", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the second partner in the distance restraint.
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASY category.
* @return StrColumn
*/
public StrColumn getAsymId2() {
return delegate.getColumn("asym_id_2", DelegatingStrColumn::new);
}
/**
* The component identifier for the first partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getCompId1() {
return delegate.getColumn("comp_id_1", DelegatingStrColumn::new);
}
/**
* The component identifier for the second partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getCompId2() {
return delegate.getColumn("comp_id_2", DelegatingStrColumn::new);
}
/**
* The sequence index for the first partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getSeqId1() {
return delegate.getColumn("seq_id_1", DelegatingIntColumn::new);
}
/**
* The sequence index for the second partner in the distance restraint.
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getSeqId2() {
return delegate.getColumn("seq_id_2", DelegatingIntColumn::new);
}
/**
* A atom identifier for the first partner in the distance restraint.
* This data item is a pointer to _chem_comp_atom.atom_id in the
* CHEM_COMP_ATOM category.
* @return StrColumn
*/
public StrColumn getAtomId1() {
return delegate.getColumn("atom_id_1", DelegatingStrColumn::new);
}
/**
* A atom identifier for the second partner in the distance restraint.
* This data item is a pointer to _chem_comp_atom.atom_id in the
* CHEM_COMP_ATOM category.
* @return StrColumn
*/
public StrColumn getAtomId2() {
return delegate.getColumn("atom_id_2", DelegatingStrColumn::new);
}
/**
* The lower limit of the distance threshold.
* @return FloatColumn
*/
public FloatColumn getLowerLimit() {
return delegate.getColumn("lower_limit", DelegatingFloatColumn::new);
}
/**
* The upper limit of the distance threshold.
* @return FloatColumn
*/
public FloatColumn getUpperLimit() {
return delegate.getColumn("upper_limit", DelegatingFloatColumn::new);
}
/**
* The estimated standard deviation of the lower limit distance threshold applied to this distance restraint.
* @return FloatColumn
*/
public FloatColumn getLowerLimitEsd() {
return delegate.getColumn("lower_limit_esd", DelegatingFloatColumn::new);
}
/**
* The estimated standard deviation of the upper limit distance threshold applied to this distance restraint.
* @return FloatColumn
*/
public FloatColumn getUpperLimitEsd() {
return delegate.getColumn("upper_limit_esd", DelegatingFloatColumn::new);
}
/**
* The real number that indicates the probability that the distance restraint
* is correct. This number should fall between 0.0 and 1.0.
* @return FloatColumn
*/
public FloatColumn getProbability() {
return delegate.getColumn("probability", DelegatingFloatColumn::new);
}
/**
* The type of distance restraint applied.
* @return StrColumn
*/
public StrColumn getRestraintType() {
return delegate.getColumn("restraint_type", DelegatingStrColumn::new);
}
/**
* The granularity of the predicted contact as applied to the model.
* @return StrColumn
*/
public StrColumn getGranularity() {
return delegate.getColumn("granularity", DelegatingStrColumn::new);
}
}