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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the category record various overall metrics
* calculated by DCC and various wrapped programs (such as Xtriage,
* pointless, REFMAC ...).
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxDccDensity extends DelegatingCategory {
public PdbxDccDensity(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "DCC_version":
return getDCCVersion();
case "pdbid":
return getPdbid();
case "pdbtype":
return getPdbtype();
case "unit_cell":
return getUnitCell();
case "space_group_name_H-M":
return getSpaceGroupNameH_M();
case "space_group_pointless":
return getSpaceGroupPointless();
case "ls_d_res_high":
return getLsDResHigh();
case "ls_d_res_high_sf":
return getLsDResHighSf();
case "ls_d_res_low_sf":
return getLsDResLowSf();
case "R_value_R_work":
return getRValueRWork();
case "R_value_R_free":
return getRValueRFree();
case "working_set_count":
return getWorkingSetCount();
case "free_set_count":
return getFreeSetCount();
case "occupancy_min":
return getOccupancyMin();
case "occupancy_max":
return getOccupancyMax();
case "occupancy_mean":
return getOccupancyMean();
case "Biso_min":
return getBisoMin();
case "Biso_max":
return getBisoMax();
case "Biso_mean":
return getBisoMean();
case "B_wilson":
return getBWilson();
case "B_wilson_scale":
return getBWilsonScale();
case "mean_I2_over_mean_I_square":
return getMeanI2OverMeanISquare();
case "mean_F_square_over_mean_F2":
return getMeanFSquareOverMeanF2();
case "mean_E2_1_abs":
return getMeanE21Abs();
case "Padilla-Yeates_L_mean":
return getPadilla_YeatesLMean();
case "Padilla-Yeates_L2_mean":
return getPadilla_YeatesL2Mean();
case "Padilla-Yeates_L2_mean_pointless":
return getPadilla_YeatesL2MeanPointless();
case "Z_score_L_test":
return getZScoreLTest();
case "twin_type":
return getTwinType();
case "twin_operator_xtriage":
return getTwinOperatorXtriage();
case "twin_fraction_xtriage":
return getTwinFractionXtriage();
case "twin_Rfactor":
return getTwinRfactor();
case "I_over_sigI_resh":
return getIOverSigIResh();
case "I_over_sigI_diff":
return getIOverSigIDiff();
case "I_over_sigI_mean":
return getIOverSigIMean();
case "ice_ring":
return getIceRing();
case "anisotropy":
return getAnisotropy();
case "Z-score":
return getZ_score();
case "prob_peak_value":
return getProbPeakValue();
case "translational_pseudo_symmetry":
return getTranslationalPseudoSymmetry();
case "wavelength":
return getWavelength();
case "B_solvent":
return getBSolvent();
case "K_solvent":
return getKSolvent();
case "TLS_refinement_reported":
return getTLSRefinementReported();
case "partial_B_value_correction_attempted":
return getPartialBValueCorrectionAttempted();
case "partial_B_value_correction_success":
return getPartialBValueCorrectionSuccess();
case "reflection_status_archived":
return getReflectionStatusArchived();
case "reflection_status_used":
return getReflectionStatusUsed();
case "iso_B_value_type":
return getIsoBValueType();
case "reflns_twin":
return getReflnsTwin();
case "twin_by_xtriage":
return getTwinByXtriage();
case "twin_operator":
return getTwinOperator();
case "twin_fraction":
return getTwinFraction();
case "tls_group_number":
return getTlsGroupNumber();
case "ncs_group_number":
return getNcsGroupNumber();
case "mtrix_number":
return getMtrixNumber();
case "Matthew_coeff":
return getMatthewCoeff();
case "solvent_content":
return getSolventContent();
case "Cruickshank_dpi_xyz":
return getCruickshankDpiXyz();
case "dpi_free_R":
return getDpiFreeR();
case "fom":
return getFom();
case "correlation_overall":
return getCorrelationOverall();
case "real_space_R_overall":
return getRealSpaceROverall();
case "mFo-DFc-3sigma_positive":
return getMFo_DFc_3sigmaPositive();
case "mFo-DFc-6sigma_positive":
return getMFo_DFc_6sigmaPositive();
case "mFo-DFc-3sigma_negative":
return getMFo_DFc_3sigmaNegative();
case "mFo-DFc-6sigma_negative":
return getMFo_DFc_6sigmaNegative();
case "Bmean-Bwilson":
return getBmean_Bwilson();
case "Rfree-Rwork":
return getRfree_Rwork();
case "error":
return getError();
default:
return new DelegatingColumn(column);
}
}
/**
* The version of the DCC program.
* @return StrColumn
*/
public StrColumn getDCCVersion() {
return delegate.getColumn("DCC_version", DelegatingStrColumn::new);
}
/**
* The PDB id code.
* @return StrColumn
*/
public StrColumn getPdbid() {
return delegate.getColumn("pdbid", DelegatingStrColumn::new);
}
/**
* The keywords of the structure (taken from
* _struct_keywords.pdbx_keywords).
* @return StrColumn
*/
public StrColumn getPdbtype() {
return delegate.getColumn("pdbtype", DelegatingStrColumn::new);
}
/**
* The unit cell parameters (a b c alpha beta gamma) separated
* by a space.
* @return StrColumn
*/
public StrColumn getUnitCell() {
return delegate.getColumn("unit_cell", DelegatingStrColumn::new);
}
/**
* Hermann-Mauguin space-group symbol reported in the model file.
* @return StrColumn
*/
public StrColumn getSpaceGroupNameH_M() {
return delegate.getColumn("space_group_name_H-M", DelegatingStrColumn::new);
}
/**
* Hermann-Mauguin space-group symbol calculated by the POINTLESS
* program using the structure factor file.
* @return StrColumn
*/
public StrColumn getSpaceGroupPointless() {
return delegate.getColumn("space_group_pointless", DelegatingStrColumn::new);
}
/**
* The highest resolution limit reported in the model file.
* @return FloatColumn
*/
public FloatColumn getLsDResHigh() {
return delegate.getColumn("ls_d_res_high", DelegatingFloatColumn::new);
}
/**
* The highest resolution limit calculated from the structure
* factor file.
* @return FloatColumn
*/
public FloatColumn getLsDResHighSf() {
return delegate.getColumn("ls_d_res_high_sf", DelegatingFloatColumn::new);
}
/**
* The lowest resolution limit calculated from the structure
* factor file.
* @return FloatColumn
*/
public FloatColumn getLsDResLowSf() {
return delegate.getColumn("ls_d_res_low_sf", DelegatingFloatColumn::new);
}
/**
* The Rwork reported in the model file.
* @return FloatColumn
*/
public FloatColumn getRValueRWork() {
return delegate.getColumn("R_value_R_work", DelegatingFloatColumn::new);
}
/**
* The Rfree reported in the model file.
* @return FloatColumn
*/
public FloatColumn getRValueRFree() {
return delegate.getColumn("R_value_R_free", DelegatingFloatColumn::new);
}
/**
* The number of unique reflections for refinement (working set)
* reported in the model file.
* @return IntColumn
*/
public IntColumn getWorkingSetCount() {
return delegate.getColumn("working_set_count", DelegatingIntColumn::new);
}
/**
* The number of unique reflections for calculating Rfree
* (testing set) reported in the model file.
* @return IntColumn
*/
public IntColumn getFreeSetCount() {
return delegate.getColumn("free_set_count", DelegatingIntColumn::new);
}
/**
* The minimum occupancy reported in the model file.
* @return FloatColumn
*/
public FloatColumn getOccupancyMin() {
return delegate.getColumn("occupancy_min", DelegatingFloatColumn::new);
}
/**
* The maximum occupancy reported in the model file.
* @return FloatColumn
*/
public FloatColumn getOccupancyMax() {
return delegate.getColumn("occupancy_max", DelegatingFloatColumn::new);
}
/**
* The averaged occupancy reported in the model file.
* @return FloatColumn
*/
public FloatColumn getOccupancyMean() {
return delegate.getColumn("occupancy_mean", DelegatingFloatColumn::new);
}
/**
* The minimum isotropic B factor reported in the model file.
* @return FloatColumn
*/
public FloatColumn getBisoMin() {
return delegate.getColumn("Biso_min", DelegatingFloatColumn::new);
}
/**
* The maximum isotropic B factor reported in the model file.
* @return FloatColumn
*/
public FloatColumn getBisoMax() {
return delegate.getColumn("Biso_max", DelegatingFloatColumn::new);
}
/**
* The occupancy weighted mean isotropic B factor reported in the
* model file.
* @return FloatColumn
*/
public FloatColumn getBisoMean() {
return delegate.getColumn("Biso_mean", DelegatingFloatColumn::new);
}
/**
* The estimated B factor from the structure factor file by the
* Wilson plot (from Xtriage).
* @return FloatColumn
*/
public FloatColumn getBWilson() {
return delegate.getColumn("B_wilson", DelegatingFloatColumn::new);
}
/**
* The scale factor for calculating the B factor by the Wilson plot
* (from Xtriage).
* @return FloatColumn
*/
public FloatColumn getBWilsonScale() {
return delegate.getColumn("B_wilson_scale", DelegatingFloatColumn::new);
}
/**
* Value of <I^2>/<I>^2 calculated by Xtriage using acentric
* reflections.(untwinned: 2.000; perfect twin 1.500).
* @return FloatColumn
*/
public FloatColumn getMeanI2OverMeanISquare() {
return delegate.getColumn("mean_I2_over_mean_I_square", DelegatingFloatColumn::new);
}
/**
* Value of <F>^2/<F^2> calculated by Xtriage using acentric
* reflections.(untwinned: 0.785; perfect twin 0.885).
* @return FloatColumn
*/
public FloatColumn getMeanFSquareOverMeanF2() {
return delegate.getColumn("mean_F_square_over_mean_F2", DelegatingFloatColumn::new);
}
/**
* Value of <|E^2 - 1|> calculated by Xtriage using acentric
* reflections.(untwinned: 0.736; perfect twin 0.541).
* @return FloatColumn
*/
public FloatColumn getMeanE21Abs() {
return delegate.getColumn("mean_E2_1_abs", DelegatingFloatColumn::new);
}
/**
* Value of <|L|> calculated by Xtriage using acentric reflections.
* (untwinned: 0.500; perfect twin: 0.375).
* @return FloatColumn
*/
public FloatColumn getPadilla_YeatesLMean() {
return delegate.getColumn("Padilla-Yeates_L_mean", DelegatingFloatColumn::new);
}
/**
* Value of <L^2> calculated by Xtriage using acentric reflections.
* (untwinned: 0.333; perfect twin: 0.200).
* @return FloatColumn
*/
public FloatColumn getPadilla_YeatesL2Mean() {
return delegate.getColumn("Padilla-Yeates_L2_mean", DelegatingFloatColumn::new);
}
/**
* Value of <L^2> calculated by Pointless using acentric reflections.
* (untwinned: 0.333; perfect twin: 0.200).
* @return FloatColumn
*/
public FloatColumn getPadilla_YeatesL2MeanPointless() {
return delegate.getColumn("Padilla-Yeates_L2_mean_pointless", DelegatingFloatColumn::new);
}
/**
* Multivariate Z score for the L-test calculated by Xtriage using
* acentric reflections. It is a quality measure of the given spread
* in intensities. Good to reasonable data are expected to have a
* Z score lower than 3.5.
* @return FloatColumn
*/
public FloatColumn getZScoreLTest() {
return delegate.getColumn("Z_score_L_test", DelegatingFloatColumn::new);
}
/**
* Type of twin (merohedral,Pseudo-merohedral or non-merohedral)
* determined by Xtriage.
* @return StrColumn
*/
public StrColumn getTwinType() {
return delegate.getColumn("twin_type", DelegatingStrColumn::new);
}
/**
* A list of the twin operators determined by Xtriage.
* @return StrColumn
*/
public StrColumn getTwinOperatorXtriage() {
return delegate.getColumn("twin_operator_xtriage", DelegatingStrColumn::new);
}
/**
* The twin fraction determined by Xtriage.
* @return FloatColumn
*/
public FloatColumn getTwinFractionXtriage() {
return delegate.getColumn("twin_fraction_xtriage", DelegatingFloatColumn::new);
}
/**
* The Rfactor calculated by Xtriage using the twin operator related
* data. (Smaller values indicate twins).
* @return FloatColumn
*/
public FloatColumn getTwinRfactor() {
return delegate.getColumn("twin_Rfactor", DelegatingFloatColumn::new);
}
/**
* The <I/SigmaI> at the highest resolution bin calculated by Xtriage.
* @return FloatColumn
*/
public FloatColumn getIOverSigIResh() {
return delegate.getColumn("I_over_sigI_resh", DelegatingFloatColumn::new);
}
/**
* The difference of the <I/SigmaI> in the last two points of the
* plot of <I/SigmaI> vs resolution (expected to be negative).
* @return FloatColumn
*/
public FloatColumn getIOverSigIDiff() {
return delegate.getColumn("I_over_sigI_diff", DelegatingFloatColumn::new);
}
/**
* The overall mean value of <I/SigmaI> for the reflections.
* @return FloatColumn
*/
public FloatColumn getIOverSigIMean() {
return delegate.getColumn("I_over_sigI_mean", DelegatingFloatColumn::new);
}
/**
* Boolean whether ice ring exists (Y) or not (N) as determined
* by Xtriage.
* @return StrColumn
*/
public StrColumn getIceRing() {
return delegate.getColumn("ice_ring", DelegatingStrColumn::new);
}
/**
* The anisotropy ( [MaxAnisoB-MinAnisoB]/[MaxAnisoB] ) calculated
* by Xtriage.
* @return FloatColumn
*/
public FloatColumn getAnisotropy() {
return delegate.getColumn("anisotropy", DelegatingFloatColumn::new);
}
/**
* Z-scores are computed (by Xtriage) on the basis of a Bernoulli
* model assuming independence of weak reflections with respect to
* anisotropy.
* @return FloatColumn
*/
public FloatColumn getZ_score() {
return delegate.getColumn("Z-score", DelegatingFloatColumn::new);
}
/**
* The probability to tell the existence of translational pseudo
* symmetry. p_values smaller than 0.05 (1e-3) might indicate weak
* (strong) translational pseudo symmetry (by Xtriage).
* @return FloatColumn
*/
public FloatColumn getProbPeakValue() {
return delegate.getColumn("prob_peak_value", DelegatingFloatColumn::new);
}
/**
* Boolean whether translational pseudo symmetry exist (Y) or
* not (N) as determined by Xtriage.
* @return StrColumn
*/
public StrColumn getTranslationalPseudoSymmetry() {
return delegate.getColumn("translational_pseudo_symmetry", DelegatingStrColumn::new);
}
/**
* The wavelength reported from the model file.
* @return FloatColumn
*/
public FloatColumn getWavelength() {
return delegate.getColumn("wavelength", DelegatingFloatColumn::new);
}
/**
* One of the scale factors used in the bulk solvent correction
* (from REFMAC).
* @return FloatColumn
*/
public FloatColumn getBSolvent() {
return delegate.getColumn("B_solvent", DelegatingFloatColumn::new);
}
/**
* One of the scale factors used in the bulk solvent correction
* (from REFMAC).
* @return FloatColumn
*/
public FloatColumn getKSolvent() {
return delegate.getColumn("K_solvent", DelegatingFloatColumn::new);
}
/**
* Whether TLS was used in refinement. Y for yes, and N for no.
* @return StrColumn
*/
public StrColumn getTLSRefinementReported() {
return delegate.getColumn("TLS_refinement_reported", DelegatingStrColumn::new);
}
/**
* Whether attempt to convert the partial to full B factors before
* validation.
* @return StrColumn
*/
public StrColumn getPartialBValueCorrectionAttempted() {
return delegate.getColumn("partial_B_value_correction_attempted", DelegatingStrColumn::new);
}
/**
* Whether the conversion of partial B to full B factor is
* successful (Y) or not (N).
* @return StrColumn
*/
public StrColumn getPartialBValueCorrectionSuccess() {
return delegate.getColumn("partial_B_value_correction_success", DelegatingStrColumn::new);
}
/**
* Whether the status is of reflection is archived (Y) or not (N).
* @return StrColumn
*/
public StrColumn getReflectionStatusArchived() {
return delegate.getColumn("reflection_status_archived", DelegatingStrColumn::new);
}
/**
* Whether the status of the reflection is used (Y) or not (N).
* @return StrColumn
*/
public StrColumn getReflectionStatusUsed() {
return delegate.getColumn("reflection_status_used", DelegatingStrColumn::new);
}
/**
* The type of B factors (partial or full) for the residue.
* @return StrColumn
*/
public StrColumn getIsoBValueType() {
return delegate.getColumn("iso_B_value_type", DelegatingStrColumn::new);
}
/**
* Boolean (Y/N) whether the twin is reported.
* @return StrColumn
*/
public StrColumn getReflnsTwin() {
return delegate.getColumn("reflns_twin", DelegatingStrColumn::new);
}
/**
* Boolean (Y/N) whether twin is detected by Xtriage.
* @return StrColumn
*/
public StrColumn getTwinByXtriage() {
return delegate.getColumn("twin_by_xtriage", DelegatingStrColumn::new);
}
/**
* Twin operators determined by REFMAC.
* @return StrColumn
*/
public StrColumn getTwinOperator() {
return delegate.getColumn("twin_operator", DelegatingStrColumn::new);
}
/**
* Twin fractions determined by REFMAC.
* @return StrColumn
*/
public StrColumn getTwinFraction() {
return delegate.getColumn("twin_fraction", DelegatingStrColumn::new);
}
/**
* Number of TLS groups used in refinement.
* @return IntColumn
*/
public IntColumn getTlsGroupNumber() {
return delegate.getColumn("tls_group_number", DelegatingIntColumn::new);
}
/**
* Number of NCS groups used in refinement.
* @return IntColumn
*/
public IntColumn getNcsGroupNumber() {
return delegate.getColumn("ncs_group_number", DelegatingIntColumn::new);
}
/**
* Number of matrix for the NCS groups used in refinement.
* @return IntColumn
*/
public IntColumn getMtrixNumber() {
return delegate.getColumn("mtrix_number", DelegatingIntColumn::new);
}
/**
* The Matthew coefficient.
* @return FloatColumn
*/
public FloatColumn getMatthewCoeff() {
return delegate.getColumn("Matthew_coeff", DelegatingFloatColumn::new);
}
/**
* The solvent content.
* @return FloatColumn
*/
public FloatColumn getSolventContent() {
return delegate.getColumn("solvent_content", DelegatingFloatColumn::new);
}
/**
* The DPI on the model determined by REFMAC.
* @return FloatColumn
*/
public FloatColumn getCruickshankDpiXyz() {
return delegate.getColumn("Cruickshank_dpi_xyz", DelegatingFloatColumn::new);
}
/**
* The DPI calculated based on the free set, determined by REFMAC.
* @return FloatColumn
*/
public FloatColumn getDpiFreeR() {
return delegate.getColumn("dpi_free_R", DelegatingFloatColumn::new);
}
/**
* The mean figure of merit after refinement.
* @return FloatColumn
*/
public FloatColumn getFom() {
return delegate.getColumn("fom", DelegatingFloatColumn::new);
}
/**
* The overall electron density correlation coefficient.
* @return FloatColumn
*/
public FloatColumn getCorrelationOverall() {
return delegate.getColumn("correlation_overall", DelegatingFloatColumn::new);
}
/**
* The overall real space R factor.
* @return FloatColumn
*/
public FloatColumn getRealSpaceROverall() {
return delegate.getColumn("real_space_R_overall", DelegatingFloatColumn::new);
}
/**
* The number of electron density positive peaks larger than 3 sigma.
* @return IntColumn
*/
public IntColumn getMFo_DFc_3sigmaPositive() {
return delegate.getColumn("mFo-DFc-3sigma_positive", DelegatingIntColumn::new);
}
/**
* The number of electron density positive peaks larger than 6 sigma.
* @return IntColumn
*/
public IntColumn getMFo_DFc_6sigmaPositive() {
return delegate.getColumn("mFo-DFc-6sigma_positive", DelegatingIntColumn::new);
}
/**
* The number of electron density negative peaks less than 3 sigma.
* @return IntColumn
*/
public IntColumn getMFo_DFc_3sigmaNegative() {
return delegate.getColumn("mFo-DFc-3sigma_negative", DelegatingIntColumn::new);
}
/**
* The number of electron density negative peaks less than 6 sigma.
* @return IntColumn
*/
public IntColumn getMFo_DFc_6sigmaNegative() {
return delegate.getColumn("mFo-DFc-6sigma_negative", DelegatingIntColumn::new);
}
/**
* The difference between the isotropic B factor and the Bfators
* from Wilson plot.
* @return FloatColumn
*/
public FloatColumn getBmean_Bwilson() {
return delegate.getColumn("Bmean-Bwilson", DelegatingFloatColumn::new);
}
/**
* The difference between reported Rfree and reported Rwork.
* @return FloatColumn
*/
public FloatColumn getRfree_Rwork() {
return delegate.getColumn("Rfree-Rwork", DelegatingFloatColumn::new);
}
/**
* Details of any error or warning messages.
* @return StrColumn
*/
public StrColumn getError() {
return delegate.getColumn("error", DelegatingStrColumn::new);
}
}
