Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance. Project price only 1 $
You can buy this project and download/modify it how often you want.
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the category record residual map properties such as
* Real Space electron density Correlation Coefficient (RSCC), real space R
* factors (RSR) and the Zscores for each residue, the main/side chains.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxDccMap extends DelegatingCategory {
public PdbxDccMap(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "model_id":
return getModelId();
case "pdb_id":
return getPdbId();
case "auth_asym_id":
return getAuthAsymId();
case "auth_comp_id":
return getAuthCompId();
case "auth_seq_id":
return getAuthSeqId();
case "label_alt_id":
return getLabelAltId();
case "label_ins_code":
return getLabelInsCode();
case "RSCC":
return getRSCC();
case "RSR":
return getRSR();
case "weighted_RSR":
return getWeightedRSR();
case "RSRZ":
return getRSRZ();
case "weighted_RSRZ":
return getWeightedRSRZ();
case "Biso_mean":
return getBisoMean();
case "occupancy_mean":
return getOccupancyMean();
case "RSCC_main_chain":
return getRSCCMainChain();
case "RSR_main_chain":
return getRSRMainChain();
case "wRSR_main_chain":
return getWRSRMainChain();
case "RSRZ_main_chain":
return getRSRZMainChain();
case "wRSRZ_main_chain":
return getWRSRZMainChain();
case "Biso_mean_main_chain":
return getBisoMeanMainChain();
case "occupancy_mean_main_chain":
return getOccupancyMeanMainChain();
case "RSCC_side_chain":
return getRSCCSideChain();
case "RSR_side_chain":
return getRSRSideChain();
case "wRSR_side_chain":
return getWRSRSideChain();
case "RSRZ_side_chain":
return getRSRZSideChain();
case "wRSRZ_side_chain":
return getWRSRZSideChain();
case "Biso_mean_side_chain":
return getBisoMeanSideChain();
case "occupancy_mean_side_chain":
return getOccupancyMeanSideChain();
case "RSCC_phosphate_group":
return getRSCCPhosphateGroup();
case "RSR_phosphate_group":
return getRSRPhosphateGroup();
case "wRSR_phosphate_group":
return getWRSRPhosphateGroup();
case "RSRZ_phosphate_group":
return getRSRZPhosphateGroup();
case "wRSRZ_phosphate_group":
return getWRSRZPhosphateGroup();
case "Biso_mean_phosphate_group":
return getBisoMeanPhosphateGroup();
case "occupancy_mean_phosphate_group":
return getOccupancyMeanPhosphateGroup();
case "shift":
return getShift();
case "shift_main_chain":
return getShiftMainChain();
case "shift_side_chain":
return getShiftSideChain();
case "density_connectivity":
return getDensityConnectivity();
case "density_index_main_chain":
return getDensityIndexMainChain();
case "density_index_side_chain":
return getDensityIndexSideChain();
case "RSZD":
return getRSZD();
case "RSZO":
return getRSZO();
case "RSZO_Zscore":
return getRSZOZscore();
case "LLDF":
return getLLDF();
case "RSZD_main_chain":
return getRSZDMainChain();
case "RSZO_main_chain":
return getRSZOMainChain();
case "RSZD_side_chain":
return getRSZDSideChain();
case "RSZO_side_chain":
return getRSZOSideChain();
case "RSZD_phosphate_group":
return getRSZDPhosphateGroup();
case "RSZO_phosphate_group":
return getRSZOPhosphateGroup();
case "quality_indicator":
return getQualityIndicator();
default:
return new DelegatingColumn(column);
}
}
/**
* The ordered number of residue in the output list.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* The component model identifier for this analysis.
* @return StrColumn
*/
public StrColumn getModelId() {
return delegate.getColumn("model_id", DelegatingStrColumn::new);
}
/**
* The PDB id code (four characters).
* @return StrColumn
*/
public StrColumn getPdbId() {
return delegate.getColumn("pdb_id", DelegatingStrColumn::new);
}
/**
* The author provided chain id.
* @return StrColumn
*/
public StrColumn getAuthAsymId() {
return delegate.getColumn("auth_asym_id", DelegatingStrColumn::new);
}
/**
* The author provided compound ID (residue name).
* @return StrColumn
*/
public StrColumn getAuthCompId() {
return delegate.getColumn("auth_comp_id", DelegatingStrColumn::new);
}
/**
* The author provided residue number.
* @return StrColumn
*/
public StrColumn getAuthSeqId() {
return delegate.getColumn("auth_seq_id", DelegatingStrColumn::new);
}
/**
* Author provided alternate location identifier.
* @return StrColumn
*/
public StrColumn getLabelAltId() {
return delegate.getColumn("label_alt_id", DelegatingStrColumn::new);
}
/**
* The PDB insertion code.
* @return StrColumn
*/
public StrColumn getLabelInsCode() {
return delegate.getColumn("label_ins_code", DelegatingStrColumn::new);
}
/**
* The Real Space electron density Correlation Coefficient for the
* residue. It is defined as
* RSCC=(<xy>-<x><y>)/[sqrt(<x**2>-<x>**2)*sqrt(<y**2>-<y>**2)]
* where x is the observed density from the (2mFo-DFc) map and y is the
* calculated density from the Fc map
* @return FloatColumn
*/
public FloatColumn getRSCC() {
return delegate.getColumn("RSCC", DelegatingFloatColumn::new);
}
/**
* The Real space Rfactor (RSR) for the residue. It is defined as
* RSR=sum(|x-y|/x+y|) which is the summation over all grid points
* around the residue, where x is the observed density from the
* (2mFo-DFc) map and y is the calculated density from the Fc map.
* @return FloatColumn
*/
public FloatColumn getRSR() {
return delegate.getColumn("RSR", DelegatingFloatColumn::new);
}
/**
* The weighted Real Space Rfactor (defined as RSR/RSCC) for the residue.
* @return FloatColumn
*/
public FloatColumn getWeightedRSR() {
return delegate.getColumn("weighted_RSR", DelegatingFloatColumn::new);
}
/**
* Zscore of the Real Space Rfactor (RSRZ) for the residue. It is defined
* as (RSR-<RSR>)/sigma_RSR, where <RSR> and sigma_RSR are for the whole map,
* RSR is for the residue.
* @return FloatColumn
*/
public FloatColumn getRSRZ() {
return delegate.getColumn("RSRZ", DelegatingFloatColumn::new);
}
/**
* Zscore of weighted Real Space Rfactor for the residue. It is defined as
* (wRSR-<wRSR>)/sigma_wRSR, where <wRSR> and sigma_wRSR are for the whole map,
* wRSR is for the residue.
* @return FloatColumn
*/
public FloatColumn getWeightedRSRZ() {
return delegate.getColumn("weighted_RSRZ", DelegatingFloatColumn::new);
}
/**
* The occupancy weighted average isotropic B factors for the residue.
* It is defined as (SUM B*Q)/(SUM Q), where B is the isotropic B factor
* for each atom and Q is the occupancy.
* @return FloatColumn
*/
public FloatColumn getBisoMean() {
return delegate.getColumn("Biso_mean", DelegatingFloatColumn::new);
}
/**
* The averaged occupancy for the residue.
* @return FloatColumn
*/
public FloatColumn getOccupancyMean() {
return delegate.getColumn("occupancy_mean", DelegatingFloatColumn::new);
}
/**
* The Real Space electron density Correlation Coefficient for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSCCMainChain() {
return delegate.getColumn("RSCC_main_chain", DelegatingFloatColumn::new);
}
/**
* The Real space Rfactor (RSR) for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSRMainChain() {
return delegate.getColumn("RSR_main_chain", DelegatingFloatColumn::new);
}
/**
* The weighted Real Space Rfactor (RSR/RSCC) for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRMainChain() {
return delegate.getColumn("wRSR_main_chain", DelegatingFloatColumn::new);
}
/**
* Zscore of the Real Space Rfactor (RSRZ) for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSRZMainChain() {
return delegate.getColumn("RSRZ_main_chain", DelegatingFloatColumn::new);
}
/**
* Zscore of weighted Real Space Rfactor (RSR/RSCC) for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRZMainChain() {
return delegate.getColumn("wRSRZ_main_chain", DelegatingFloatColumn::new);
}
/**
* The occupancy weighted average isotropic B factors for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getBisoMeanMainChain() {
return delegate.getColumn("Biso_mean_main_chain", DelegatingFloatColumn::new);
}
/**
* The averaged occupancy forthe main chain atoms.
* @return FloatColumn
*/
public FloatColumn getOccupancyMeanMainChain() {
return delegate.getColumn("occupancy_mean_main_chain", DelegatingFloatColumn::new);
}
/**
* The Real Space electron density Correlation Coefficient for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSCCSideChain() {
return delegate.getColumn("RSCC_side_chain", DelegatingFloatColumn::new);
}
/**
* The Real space Rfactor (RSR) for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSRSideChain() {
return delegate.getColumn("RSR_side_chain", DelegatingFloatColumn::new);
}
/**
* The weighted Real Space Rfactor (RSR/RSCC) for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRSideChain() {
return delegate.getColumn("wRSR_side_chain", DelegatingFloatColumn::new);
}
/**
* Zscore of the Real Space Rfactor (RSRZ) for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSRZSideChain() {
return delegate.getColumn("RSRZ_side_chain", DelegatingFloatColumn::new);
}
/**
* Zscore of weighted Real Space Rfactor (RSR/RSCC) for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRZSideChain() {
return delegate.getColumn("wRSRZ_side_chain", DelegatingFloatColumn::new);
}
/**
* The occupancy weighted average isotropic B factors for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getBisoMeanSideChain() {
return delegate.getColumn("Biso_mean_side_chain", DelegatingFloatColumn::new);
}
/**
* The averaged occupancy forthe side chain atoms.
* @return FloatColumn
*/
public FloatColumn getOccupancyMeanSideChain() {
return delegate.getColumn("occupancy_mean_side_chain", DelegatingFloatColumn::new);
}
/**
* The Real Space electron density Correlation Coefficient for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getRSCCPhosphateGroup() {
return delegate.getColumn("RSCC_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The Real space Rfactor (RSR) for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getRSRPhosphateGroup() {
return delegate.getColumn("RSR_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The weighted Real Space Rfactor (RSR/RSCC) for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRPhosphateGroup() {
return delegate.getColumn("wRSR_phosphate_group", DelegatingFloatColumn::new);
}
/**
* Zscore of the Real Space Rfactor (RSRZ) for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getRSRZPhosphateGroup() {
return delegate.getColumn("RSRZ_phosphate_group", DelegatingFloatColumn::new);
}
/**
* Zscore of weighted Real Space Rfactor (RSR/RSCC) for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getWRSRZPhosphateGroup() {
return delegate.getColumn("wRSRZ_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The occupancy weighted average isotropic B factors for the phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getBisoMeanPhosphateGroup() {
return delegate.getColumn("Biso_mean_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The averaged occupancy forthe phosphate atoms.
* @return FloatColumn
*/
public FloatColumn getOccupancyMeanPhosphateGroup() {
return delegate.getColumn("occupancy_mean_phosphate_group", DelegatingFloatColumn::new);
}
/**
* Defined in sfcheck (displacement/sigma_of_displacement).
* Displacement of atoms from electron density is estimated from the
* difference (Fobs - Fcal) map. The displacement vector is the ratio
* of the gradient of difference density to the curvature. The amplitude
* of the displacement vector is an indicator of the positional error.
* @return FloatColumn
*/
public FloatColumn getShift() {
return delegate.getColumn("shift", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.density_shift, but it is for main chain.
* @return FloatColumn
*/
public FloatColumn getShiftMainChain() {
return delegate.getColumn("shift_main_chain", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.density_shift, but it is for side chain.
* @return FloatColumn
*/
public FloatColumn getShiftSideChain() {
return delegate.getColumn("shift_side_chain", DelegatingFloatColumn::new);
}
/**
* Defined in sfcheck. It is the product of the (2Fobs-Fcal) electron
* density values for the backbone atoms N, CA and C, and in the case of
* RNA/DNA, for P, O5', C5', C3', O3'. Low values of this index indicate
* breaks in the backbone electron density which may be due to flexibility
* of the chain or incorrect tracing.
* @return FloatColumn
*/
public FloatColumn getDensityConnectivity() {
return delegate.getColumn("density_connectivity", DelegatingFloatColumn::new);
}
/**
* Defined in sfcheck. It is the mean density of the main chain atoms
* divided by the mean density of the map.
* @return FloatColumn
*/
public FloatColumn getDensityIndexMainChain() {
return delegate.getColumn("density_index_main_chain", DelegatingFloatColumn::new);
}
/**
* Defined in sfcheck. It is the mean density of the side chain atoms
* divided by the mean density of the map.
* @return FloatColumn
*/
public FloatColumn getDensityIndexSideChain() {
return delegate.getColumn("density_index_side_chain", DelegatingFloatColumn::new);
}
/**
* The real space difference density Z score
* (defined as Delta_rho/sigma(Delta_rho)) from Tickle (2012). It is
* related to the model accuracy. RSZD>3, significant extra positive
* density around the residue; RSZD<-3, significant extra negative
* density around the residue.
* @return FloatColumn
*/
public FloatColumn getRSZD() {
return delegate.getColumn("RSZD", DelegatingFloatColumn::new);
}
/**
* The real space observed density Z score (defined as <rho_obs>/sigma(Delta_rho))
* from Tickle (2012). It is related to the model precision (B factors).
* Small or large value means weak or strong density for the residue.
* @return FloatColumn
*/
public FloatColumn getRSZO() {
return delegate.getColumn("RSZO", DelegatingFloatColumn::new);
}
/**
* The Zscore of RSZO (or the Zscore of <rho_obs>/sigma(Delta_rho)).
* @return FloatColumn
*/
public FloatColumn getRSZOZscore() {
return delegate.getColumn("RSZO_Zscore", DelegatingFloatColumn::new);
}
/**
* It is the Ligand Local Density Function defined as the
* (<RsR>_local - RsR_Ligand)/sigma_RsR, where <RsR>_local is the
* mean RSR of polymer residues in 5 angstroms (including the
* crystallographic symmetry) surrounding the ligand, and sigma_RsR
* is sigma value calculated from the surrounding residues.
* @return FloatColumn
*/
public FloatColumn getLLDF() {
return delegate.getColumn("LLDF", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZD, use for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSZDMainChain() {
return delegate.getColumn("RSZD_main_chain", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZO, use for the main chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSZOMainChain() {
return delegate.getColumn("RSZO_main_chain", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZD, use for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSZDSideChain() {
return delegate.getColumn("RSZD_side_chain", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZO, use for the side chain atoms.
* @return FloatColumn
*/
public FloatColumn getRSZOSideChain() {
return delegate.getColumn("RSZO_side_chain", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZD, use for the phosphate atoms of
* nucleic acids.
* @return FloatColumn
*/
public FloatColumn getRSZDPhosphateGroup() {
return delegate.getColumn("RSZD_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The same as _pdbx_dcc_map.RSZO, use for the phosphate atoms of
* nucleic acids.
* @return FloatColumn
*/
public FloatColumn getRSZOPhosphateGroup() {
return delegate.getColumn("RSZO_phosphate_group", DelegatingFloatColumn::new);
}
/**
* The value indicates any problems with this group of atoms. If given
* as 'd', it means there is problem of local model accuracy. If given
* as 'w', it means weak density (there is problem of local model
* precision). If given as 'dw', both then problems exist.
* @return StrColumn
*/
public StrColumn getQualityIndicator() {
return delegate.getColumn("quality_indicator", DelegatingStrColumn::new);
}
}
