org.rcsb.cif.schema.mm.PdbxEntitySrcGenPure Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* This category contains details for the final purified protein product. Note
* that this category does not contain the amino acid sequence of the protein.
* The sequence will be found in the ENTITY_POLY_SEQ entry with matching
* entity_id.
* Only one PDBX_ENTITY_SRC_GEN_PURE category is allowed per entity, hence there is
* no step_id for this category.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenPure extends DelegatingCategory {
public PdbxEntitySrcGenPure(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "entity_id":
return getEntityId();
case "step_id":
return getStepId();
case "product_id":
return getProductId();
case "date":
return getDate();
case "conc_device_id":
return getConcDeviceId();
case "conc_details":
return getConcDetails();
case "conc_assay_method":
return getConcAssayMethod();
case "protein_concentration":
return getProteinConcentration();
case "protein_yield":
return getProteinYield();
case "protein_purity":
return getProteinPurity();
case "protein_oligomeric_state":
return getProteinOligomericState();
case "storage_buffer_id":
return getStorageBufferId();
case "storage_temperature":
return getStorageTemperature();
case "summary":
return getSummary();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_entity_src_gen_pure.entry_id uniquely identifies
* a sample consisting of one or more proteins whose structure is
* to be determined. This is a pointer to _entry.id. This item may
* be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_entity_src_gen_pure.entity_id uniquely identifies
* each protein contained in the project target complex proteins whose
* structure is to be determined. This data item is a pointer to _entity.id
* in the ENTITY category. This item may be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* This item unique identifier the production step.
* @return IntColumn
*/
public IntColumn getStepId() {
return delegate.getColumn("step_id", DelegatingIntColumn::new);
}
/**
* When present, this item should be a globally unique identifier
* that identifies the final product. It is envisaged that this
* should be the same as and product code associated with the
* sample and would provide the key by which information about
* the production process may be extracted from the protein
* production facility. For files describing the protein
* production process (i.e. where _entity.type is 'P' or 'E')
* this should have the same value as _entry.id
* @return StrColumn
*/
public StrColumn getProductId() {
return delegate.getColumn("product_id", DelegatingStrColumn::new);
}
/**
* The date of production step.
* @return StrColumn
*/
public StrColumn getDate() {
return delegate.getColumn("date", DelegatingStrColumn::new);
}
/**
* This data item is a pointer to pdbx_robot_system.id
* in the PDBX_ROBOT_SYSTEM category.
* @return StrColumn
*/
public StrColumn getConcDeviceId() {
return delegate.getColumn("conc_device_id", DelegatingStrColumn::new);
}
/**
* Details of the protein concentration procedure
* @return StrColumn
*/
public StrColumn getConcDetails() {
return delegate.getColumn("conc_details", DelegatingStrColumn::new);
}
/**
* The method used to measure the protein concentration
* @return StrColumn
*/
public StrColumn getConcAssayMethod() {
return delegate.getColumn("conc_assay_method", DelegatingStrColumn::new);
}
/**
* The final concentration of the protein.
* @return FloatColumn
*/
public FloatColumn getProteinConcentration() {
return delegate.getColumn("protein_concentration", DelegatingFloatColumn::new);
}
/**
* The yield of protein in milligrams.
* @return FloatColumn
*/
public FloatColumn getProteinYield() {
return delegate.getColumn("protein_yield", DelegatingFloatColumn::new);
}
/**
* The purity of the protein (percent).
* @return FloatColumn
*/
public FloatColumn getProteinPurity() {
return delegate.getColumn("protein_purity", DelegatingFloatColumn::new);
}
/**
* The oligomeric state of the protein. Monomeric is 1, dimeric 2, etc.
* @return IntColumn
*/
public IntColumn getProteinOligomericState() {
return delegate.getColumn("protein_oligomeric_state", DelegatingIntColumn::new);
}
/**
* This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
* The referenced buffer is that in which the protein was stored.
* @return StrColumn
*/
public StrColumn getStorageBufferId() {
return delegate.getColumn("storage_buffer_id", DelegatingStrColumn::new);
}
/**
* The temperature in degrees celsius at which the protein was stored.
* @return FloatColumn
*/
public FloatColumn getStorageTemperature() {
return delegate.getColumn("storage_temperature", DelegatingFloatColumn::new);
}
/**
* Summary of the details of protein purification method used to obtain the final
* protein product. This description should include any lysis, fractionation,
* proteolysis, refolding, chromatography used as well as the method used the
* characterize the final product.
* @return StrColumn
*/
public StrColumn getSummary() {
return delegate.getColumn("summary", DelegatingStrColumn::new);
}
}