org.rcsb.cif.schema.mm.PdbxEntitySrcSyn Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* The data items in category PDBX_ENTITY_SRC_SYN record the source details
* about chemically synthesized molecules.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcSyn extends DelegatingCategory {
public PdbxEntitySrcSyn(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "details":
return getDetails();
case "organism_scientific":
return getOrganismScientific();
case "organism_common_name":
return getOrganismCommonName();
case "strain":
return getStrain();
case "ncbi_taxonomy_id":
return getNcbiTaxonomyId();
case "entity_id":
return getEntityId();
case "pdbx_src_id":
return getPdbxSrcId();
case "pdbx_alt_source_flag":
return getPdbxAltSourceFlag();
case "pdbx_beg_seq_num":
return getPdbxBegSeqNum();
case "pdbx_end_seq_num":
return getPdbxEndSeqNum();
default:
return new DelegatingColumn(column);
}
}
/**
* A description of special aspects of the source for the
* synthetic entity.
* @return StrColumn
*/
public StrColumn getDetails() {
return delegate.getColumn("details", DelegatingStrColumn::new);
}
/**
* The scientific name of the organism from which the sequence of
* the synthetic entity was derived.
* @return StrColumn
*/
public StrColumn getOrganismScientific() {
return delegate.getColumn("organism_scientific", DelegatingStrColumn::new);
}
/**
* The common name of the organism from which the sequence of
* the synthetic entity was derived.
* @return StrColumn
*/
public StrColumn getOrganismCommonName() {
return delegate.getColumn("organism_common_name", DelegatingStrColumn::new);
}
/**
* The strain of the organism from which the sequence of
* the synthetic entity was derived.
* @return StrColumn
*/
public StrColumn getStrain() {
return delegate.getColumn("strain", DelegatingStrColumn::new);
}
/**
* NCBI Taxonomy identifier of the organism from which the sequence of
* the synthetic entity was derived.
*
* Reference:
*
* Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD,
* Tatusova TA, Rapp BA (2000). Database resources of the National
* Center for Biotechnology Information. Nucleic Acids Res 2000 Jan
* 1;28(1):10-4
*
* Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA,
* Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
* @return StrColumn
*/
public StrColumn getNcbiTaxonomyId() {
return delegate.getColumn("ncbi_taxonomy_id", DelegatingStrColumn::new);
}
/**
* This data item is a pointer to _entity.id in the ENTITY category.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* This data item is an ordinal identifier for pdbx_entity_src_syn data records.
* @return IntColumn
*/
public IntColumn getPdbxSrcId() {
return delegate.getColumn("pdbx_src_id", DelegatingIntColumn::new);
}
/**
* This data item identifies cases in which an alternative source
* modeled.
* @return StrColumn
*/
public StrColumn getPdbxAltSourceFlag() {
return delegate.getColumn("pdbx_alt_source_flag", DelegatingStrColumn::new);
}
/**
* The beginning polymer sequence position for the polymer section corresponding
* to this source.
*
* A reference to the sequence position in the entity_poly category.
* @return IntColumn
*/
public IntColumn getPdbxBegSeqNum() {
return delegate.getColumn("pdbx_beg_seq_num", DelegatingIntColumn::new);
}
/**
* The ending polymer sequence position for the polymer section corresponding
* to this source.
*
* A reference to the sequence position in the entity_poly category.
* @return IntColumn
*/
public IntColumn getPdbxEndSeqNum() {
return delegate.getColumn("pdbx_end_seq_num", DelegatingIntColumn::new);
}
}