org.rcsb.cif.schema.mm.PdbxValidateCloseContact Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PDBX_VALIDATE_CLOSE_CONTACT category list the
* atoms within the entry that are in close contact with regard
* the distances expected from either covalent bonding or closest
* approach by van der Waals contacts. Contacts within
* the asymmetric unit are considered.
*
* For those contacts not involving hydrogen a limit of
* 2.2 angstroms is used. For contacts involving a hydrogen atom
* a cutoff of 1.6 angstroms is used.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidateCloseContact extends DelegatingCategory {
public PdbxValidateCloseContact(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "PDB_model_num":
return getPDBModelNum();
case "auth_asym_id_1":
return getAuthAsymId1();
case "auth_atom_id_1":
return getAuthAtomId1();
case "auth_comp_id_1":
return getAuthCompId1();
case "auth_seq_id_1":
return getAuthSeqId1();
case "auth_atom_id_2":
return getAuthAtomId2();
case "auth_asym_id_2":
return getAuthAsymId2();
case "auth_comp_id_2":
return getAuthCompId2();
case "auth_seq_id_2":
return getAuthSeqId2();
case "PDB_ins_code_1":
return getPDBInsCode1();
case "PDB_ins_code_2":
return getPDBInsCode2();
case "label_alt_id_1":
return getLabelAltId1();
case "label_alt_id_2":
return getLabelAltId2();
case "symm_as_xyz_1":
return getSymmAsXyz1();
case "symm_as_xyz_2":
return getSymmAsXyz2();
case "dist":
return getDist();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_validate_close_contact.id must uniquely identify
* each item in the PDBX_VALIDATE_CLOSE_CONTACT list.
* This is an integer serial number.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* The model number for the given contact
* @return IntColumn
*/
public IntColumn getPDBModelNum() {
return delegate.getColumn("PDB_model_num", DelegatingIntColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the close contact.
*
* This data item is a pointer to _atom_site.auth_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAsymId1() {
return delegate.getColumn("auth_asym_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the close contact.
* This data item is a pointer to _atom_site.auth_atom_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAtomId1() {
return delegate.getColumn("auth_atom_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the close contact.
*
* This data item is a pointer to _atom_site.auth_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthCompId1() {
return delegate.getColumn("auth_comp_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the close contact.
*
* This data item is a pointer to _atom_site.auth_seq_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthSeqId1() {
return delegate.getColumn("auth_seq_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the close contact.
*
* This data item is a pointer to _atom_site.auth_atom_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAtomId2() {
return delegate.getColumn("auth_atom_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the close contact.
* This data item is a pointer to _atom_site.auth_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAsymId2() {
return delegate.getColumn("auth_asym_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the close contact.
*
* This data item is a pointer to _atom_site.auth_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthCompId2() {
return delegate.getColumn("auth_comp_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the close contact.
*
* This data item is a pointer to _atom_site.auth_seq_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthSeqId2() {
return delegate.getColumn("auth_seq_id_2", DelegatingStrColumn::new);
}
/**
* Optional identifier of the first of the two atom sites that
* define the close contact.
*
* This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getPDBInsCode1() {
return delegate.getColumn("PDB_ins_code_1", DelegatingStrColumn::new);
}
/**
* Optional identifier of the second of the two atom sites that
* define the close contact.
*
* This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getPDBInsCode2() {
return delegate.getColumn("PDB_ins_code_2", DelegatingStrColumn::new);
}
/**
* An optional identifier of the first of the two atoms that
* define the close contact.
*
* This data item is a pointer to _atom_site.label_alt_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelAltId1() {
return delegate.getColumn("label_alt_id_1", DelegatingStrColumn::new);
}
/**
* An optional identifier of the second of the two atoms that
* define the close contact.
*
* This data item is a pointer to _atom_site.label_alt_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelAltId2() {
return delegate.getColumn("label_alt_id_2", DelegatingStrColumn::new);
}
/**
* The symmetry of the first of the two atoms define the close contact.
* The Symmetry equivalent position is given in the 'xyz' representation.
* @return StrColumn
*/
public StrColumn getSymmAsXyz1() {
return delegate.getColumn("symm_as_xyz_1", DelegatingStrColumn::new);
}
/**
* The symmetry of the second of the two atoms define the close contact.
* The Symmetry equivalent position is given in the 'xyz' representation.
* @return StrColumn
*/
public StrColumn getSymmAsXyz2() {
return delegate.getColumn("symm_as_xyz_2", DelegatingStrColumn::new);
}
/**
* The value of the close contact for the two atoms defined.
* @return FloatColumn
*/
public FloatColumn getDist() {
return delegate.getColumn("dist", DelegatingFloatColumn::new);
}
}