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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the CHEM_COMP_ATOM category record details about
* the atoms in a chemical component. Specifying the atomic
* coordinates for the components in this category is an
* alternative to specifying the structure of the component
* via bonds, angles, planes etc. in the appropriate
* CHEM_COMP subcategories.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class ChemCompAtom extends DelegatingCategory {
public ChemCompAtom(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "alt_atom_id":
return getAltAtomId();
case "atom_id":
return getAtomId();
case "charge":
return getCharge();
case "model_Cartn_x":
return getModelCartnX();
case "model_Cartn_x_esd":
return getModelCartnXEsd();
case "model_Cartn_y":
return getModelCartnY();
case "model_Cartn_y_esd":
return getModelCartnYEsd();
case "model_Cartn_z":
return getModelCartnZ();
case "model_Cartn_z_esd":
return getModelCartnZEsd();
case "comp_id":
return getCompId();
case "partial_charge":
return getPartialCharge();
case "substruct_code":
return getSubstructCode();
case "type_symbol":
return getTypeSymbol();
case "pdbx_align":
return getPdbxAlign();
case "pdbx_ordinal":
return getPdbxOrdinal();
case "pdbx_component_atom_id":
return getPdbxComponentAtomId();
case "pdbx_component_comp_id":
return getPdbxComponentCompId();
case "pdbx_alt_atom_id":
return getPdbxAltAtomId();
case "pdbx_alt_comp_id":
return getPdbxAltCompId();
case "pdbx_model_Cartn_x_ideal":
return getPdbxModelCartnXIdeal();
case "pdbx_model_Cartn_y_ideal":
return getPdbxModelCartnYIdeal();
case "pdbx_model_Cartn_z_ideal":
return getPdbxModelCartnZIdeal();
case "pdbx_stereo_config":
return getPdbxStereoConfig();
case "pdbx_aromatic_flag":
return getPdbxAromaticFlag();
case "pdbx_leaving_atom_flag":
return getPdbxLeavingAtomFlag();
case "pdbx_residue_numbering":
return getPdbxResidueNumbering();
case "pdbx_polymer_type":
return getPdbxPolymerType();
case "pdbx_ref_id":
return getPdbxRefId();
case "pdbx_component_id":
return getPdbxComponentId();
case "pdbx_component_entity_id":
return getPdbxComponentEntityId();
case "pdbx_stnd_atom_id":
return getPdbxStndAtomId();
default:
return new DelegatingColumn(column);
}
}
/**
* An alternative identifier for the atom. This data item would be
* used in cases where alternative nomenclatures exist for labelling
* atoms in a group.
* @return StrColumn
*/
public StrColumn getAltAtomId() {
return delegate.getColumn("alt_atom_id", DelegatingStrColumn::new);
}
/**
* The value of _chem_comp_atom.atom_id must uniquely identify
* each atom in each monomer in the CHEM_COMP_ATOM list.
*
* The atom identifiers need not be unique over all atoms in the
* data block; they need only be unique for each atom in a
* component.
*
* Note that this item need not be a number; it can be any unique
* identifier.
* @return StrColumn
*/
public StrColumn getAtomId() {
return delegate.getColumn("atom_id", DelegatingStrColumn::new);
}
/**
* The net integer charge assigned to this atom. This is the
* formal charge assignment normally found in chemical diagrams.
* @return IntColumn
*/
public IntColumn getCharge() {
return delegate.getColumn("charge", DelegatingIntColumn::new);
}
/**
* The x component of the coordinates for this atom in this
* component specified as orthogonal angstroms. The choice of
* reference axis frame for the coordinates is arbitrary.
*
* The set of coordinates input for the entity here is intended to
* correspond to the atomic model used to generate restraints for
* structure refinement, not to atom sites in the ATOM_SITE
* list.
* @return FloatColumn
*/
public FloatColumn getModelCartnX() {
return delegate.getColumn("model_Cartn_x", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _chem_comp_atom.model_Cartn_x.
* @return FloatColumn
*/
public FloatColumn getModelCartnXEsd() {
return delegate.getColumn("model_Cartn_x_esd", DelegatingFloatColumn::new);
}
/**
* The y component of the coordinates for this atom in this
* component specified as orthogonal angstroms. The choice of
* reference axis frame for the coordinates is arbitrary.
*
* The set of coordinates input for the entity here is intended to
* correspond to the atomic model used to generate restraints for
* structure refinement, not to atom sites in the ATOM_SITE
* list.
* @return FloatColumn
*/
public FloatColumn getModelCartnY() {
return delegate.getColumn("model_Cartn_y", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _chem_comp_atom.model_Cartn_y.
* @return FloatColumn
*/
public FloatColumn getModelCartnYEsd() {
return delegate.getColumn("model_Cartn_y_esd", DelegatingFloatColumn::new);
}
/**
* The z component of the coordinates for this atom in this
* component specified as orthogonal angstroms. The choice of
* reference axis frame for the coordinates is arbitrary.
*
* The set of coordinates input for the entity here is intended to
* correspond to the atomic model used to generate restraints for
* structure refinement, not to atom sites in the ATOM_SITE
* list.
* @return FloatColumn
*/
public FloatColumn getModelCartnZ() {
return delegate.getColumn("model_Cartn_z", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _chem_comp_atom.model_Cartn_z.
* @return FloatColumn
*/
public FloatColumn getModelCartnZEsd() {
return delegate.getColumn("model_Cartn_z_esd", DelegatingFloatColumn::new);
}
/**
* This data item is a pointer to _chem_comp.id in the CHEM_COMP
* category.
* @return StrColumn
*/
public StrColumn getCompId() {
return delegate.getColumn("comp_id", DelegatingStrColumn::new);
}
/**
* The partial charge assigned to this atom.
* @return FloatColumn
*/
public FloatColumn getPartialCharge() {
return delegate.getColumn("partial_charge", DelegatingFloatColumn::new);
}
/**
* This data item assigns the atom to a substructure of the
* component, if appropriate.
* @return StrColumn
*/
public StrColumn getSubstructCode() {
return delegate.getColumn("substruct_code", DelegatingStrColumn::new);
}
/**
* The code used to identify the atom species representing
* this atom type. Normally this code is the element
* symbol.
* @return StrColumn
*/
public StrColumn getTypeSymbol() {
return delegate.getColumn("type_symbol", DelegatingStrColumn::new);
}
/**
* Atom name alignment offset in PDB atom field.
* @return IntColumn
*/
public IntColumn getPdbxAlign() {
return delegate.getColumn("pdbx_align", DelegatingIntColumn::new);
}
/**
* Ordinal index for the component atom list.
* @return IntColumn
*/
public IntColumn getPdbxOrdinal() {
return delegate.getColumn("pdbx_ordinal", DelegatingIntColumn::new);
}
/**
* The atom identifier in the subcomponent where a
* larger component has been divided subcomponents.
* @return StrColumn
*/
public StrColumn getPdbxComponentAtomId() {
return delegate.getColumn("pdbx_component_atom_id", DelegatingStrColumn::new);
}
/**
* The component identifier for the subcomponent where a
* larger component has been divided subcomponents.
* @return StrColumn
*/
public StrColumn getPdbxComponentCompId() {
return delegate.getColumn("pdbx_component_comp_id", DelegatingStrColumn::new);
}
/**
* An alternative identifier for the atom. This data item would be
* used in cases where alternative nomenclatures exist for labelling
* atoms in a group.
* @return StrColumn
*/
public StrColumn getPdbxAltAtomId() {
return delegate.getColumn("pdbx_alt_atom_id", DelegatingStrColumn::new);
}
/**
* An alternative identifier for the atom. This data item would be
* used in cases where alternative nomenclatures exist for labelling
* atoms in a group.
* @return StrColumn
*/
public StrColumn getPdbxAltCompId() {
return delegate.getColumn("pdbx_alt_comp_id", DelegatingStrColumn::new);
}
/**
* An alternative x component of the coordinates for this atom in this
* component specified as orthogonal angstroms.
* @return FloatColumn
*/
public FloatColumn getPdbxModelCartnXIdeal() {
return delegate.getColumn("pdbx_model_Cartn_x_ideal", DelegatingFloatColumn::new);
}
/**
* An alternative y component of the coordinates for this atom in this
* component specified as orthogonal angstroms.
* @return FloatColumn
*/
public FloatColumn getPdbxModelCartnYIdeal() {
return delegate.getColumn("pdbx_model_Cartn_y_ideal", DelegatingFloatColumn::new);
}
/**
* An alternative z component of the coordinates for this atom in this
* component specified as orthogonal angstroms.
* @return FloatColumn
*/
public FloatColumn getPdbxModelCartnZIdeal() {
return delegate.getColumn("pdbx_model_Cartn_z_ideal", DelegatingFloatColumn::new);
}
/**
* The chiral configuration of the atom that is a chiral center.
* @return StrColumn
*/
public StrColumn getPdbxStereoConfig() {
return delegate.getColumn("pdbx_stereo_config", DelegatingStrColumn::new);
}
/**
* A flag indicating an aromatic atom.
* @return StrColumn
*/
public StrColumn getPdbxAromaticFlag() {
return delegate.getColumn("pdbx_aromatic_flag", DelegatingStrColumn::new);
}
/**
* A flag indicating a leaving atom.
* @return StrColumn
*/
public StrColumn getPdbxLeavingAtomFlag() {
return delegate.getColumn("pdbx_leaving_atom_flag", DelegatingStrColumn::new);
}
/**
* Preferred residue numbering in the BIRD definition.
* @return IntColumn
*/
public IntColumn getPdbxResidueNumbering() {
return delegate.getColumn("pdbx_residue_numbering", DelegatingIntColumn::new);
}
/**
* Is the atom in a polymer or non-polymer subcomponent in the BIRD definition.
* @return StrColumn
*/
public StrColumn getPdbxPolymerType() {
return delegate.getColumn("pdbx_polymer_type", DelegatingStrColumn::new);
}
/**
* A reference to _pdbx_reference_entity_list.ref_entity_id
* @return StrColumn
*/
public StrColumn getPdbxRefId() {
return delegate.getColumn("pdbx_ref_id", DelegatingStrColumn::new);
}
/**
* A reference to _pdbx_reference_entity_list.component_id
* @return IntColumn
*/
public IntColumn getPdbxComponentId() {
return delegate.getColumn("pdbx_component_id", DelegatingIntColumn::new);
}
/**
* A reference to entity identifier in data category
* pdbx_chem_comp_subcomponent_entity_list.
* @return IntColumn
*/
public IntColumn getPdbxComponentEntityId() {
return delegate.getColumn("pdbx_component_entity_id", DelegatingIntColumn::new);
}
/**
* A standard identifier for the atom. This data item is used when
* IUPAC/IUBMB nomenclature exists for labeling atoms.
* @return StrColumn
*/
public StrColumn getPdbxStndAtomId() {
return delegate.getColumn("pdbx_stnd_atom_id", DelegatingStrColumn::new);
}
}