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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the ENTITY_SRC_GEN category record details of
* the source from which the entity was obtained in cases
* where the source was genetically manipulated. The
* following are treated separately: items pertaining to the tissue
* from which the gene was obtained, items pertaining to the host
* organism for gene expression and items pertaining to the actual
* producing organism (plasmid).
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class EntitySrcGen extends DelegatingCategory {
public EntitySrcGen(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entity_id":
return getEntityId();
case "gene_src_common_name":
return getGeneSrcCommonName();
case "gene_src_details":
return getGeneSrcDetails();
case "gene_src_genus":
return getGeneSrcGenus();
case "gene_src_species":
return getGeneSrcSpecies();
case "gene_src_strain":
return getGeneSrcStrain();
case "gene_src_tissue":
return getGeneSrcTissue();
case "gene_src_tissue_fraction":
return getGeneSrcTissueFraction();
case "host_org_genus":
return getHostOrgGenus();
case "host_org_species":
return getHostOrgSpecies();
case "pdbx_gene_src_fragment":
return getPdbxGeneSrcFragment();
case "pdbx_gene_src_gene":
return getPdbxGeneSrcGene();
case "pdbx_gene_src_scientific_name":
return getPdbxGeneSrcScientificName();
case "pdbx_gene_src_variant":
return getPdbxGeneSrcVariant();
case "pdbx_gene_src_cell_line":
return getPdbxGeneSrcCellLine();
case "pdbx_gene_src_atcc":
return getPdbxGeneSrcAtcc();
case "pdbx_gene_src_organ":
return getPdbxGeneSrcOrgan();
case "pdbx_gene_src_organelle":
return getPdbxGeneSrcOrganelle();
case "pdbx_gene_src_plasmid":
return getPdbxGeneSrcPlasmid();
case "pdbx_gene_src_plasmid_name":
return getPdbxGeneSrcPlasmidName();
case "pdbx_gene_src_cell":
return getPdbxGeneSrcCell();
case "pdbx_gene_src_cellular_location":
return getPdbxGeneSrcCellularLocation();
case "pdbx_host_org_gene":
return getPdbxHostOrgGene();
case "pdbx_host_org_organ":
return getPdbxHostOrgOrgan();
case "pdbx_host_org_organelle":
return getPdbxHostOrgOrganelle();
case "pdbx_host_org_cellular_location":
return getPdbxHostOrgCellularLocation();
case "pdbx_host_org_strain":
return getPdbxHostOrgStrain();
case "pdbx_host_org_tissue_fraction":
return getPdbxHostOrgTissueFraction();
case "pdbx_description":
return getPdbxDescription();
case "host_org_common_name":
return getHostOrgCommonName();
case "host_org_details":
return getHostOrgDetails();
case "host_org_strain":
return getHostOrgStrain();
case "plasmid_details":
return getPlasmidDetails();
case "plasmid_name":
return getPlasmidName();
case "pdbx_host_org_variant":
return getPdbxHostOrgVariant();
case "pdbx_host_org_cell_line":
return getPdbxHostOrgCellLine();
case "pdbx_host_org_atcc":
return getPdbxHostOrgAtcc();
case "pdbx_host_org_culture_collection":
return getPdbxHostOrgCultureCollection();
case "pdbx_host_org_cell":
return getPdbxHostOrgCell();
case "pdbx_host_org_scientific_name":
return getPdbxHostOrgScientificName();
case "pdbx_host_org_tissue":
return getPdbxHostOrgTissue();
case "pdbx_host_org_vector":
return getPdbxHostOrgVector();
case "pdbx_host_org_vector_type":
return getPdbxHostOrgVectorType();
case "expression_system_id":
return getExpressionSystemId();
case "gene_src_dev_stage":
return getGeneSrcDevStage();
case "start_construct_id":
return getStartConstructId();
case "pdbx_gene_src_ncbi_taxonomy_id":
return getPdbxGeneSrcNcbiTaxonomyId();
case "pdbx_host_org_ncbi_taxonomy_id":
return getPdbxHostOrgNcbiTaxonomyId();
case "pdbx_src_id":
return getPdbxSrcId();
case "pdbx_alt_source_flag":
return getPdbxAltSourceFlag();
case "pdbx_seq_type":
return getPdbxSeqType();
case "pdbx_beg_seq_num":
return getPdbxBegSeqNum();
case "pdbx_end_seq_num":
return getPdbxEndSeqNum();
case "pdbx_gene_src_culture_collection":
return getPdbxGeneSrcCultureCollection();
default:
return new DelegatingColumn(column);
}
}
/**
* This data item is a pointer to _entity.id in the ENTITY category.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* The common name of the natural organism from which the gene was
* obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcCommonName() {
return delegate.getColumn("gene_src_common_name", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the natural organism from
* which the gene was obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcDetails() {
return delegate.getColumn("gene_src_details", DelegatingStrColumn::new);
}
/**
* The genus of the natural organism from which the gene was
* obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcGenus() {
return delegate.getColumn("gene_src_genus", DelegatingStrColumn::new);
}
/**
* The species of the natural organism from which the gene was
* obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcSpecies() {
return delegate.getColumn("gene_src_species", DelegatingStrColumn::new);
}
/**
* The strain of the natural organism from which the gene was
* obtained, if relevant.
* @return StrColumn
*/
public StrColumn getGeneSrcStrain() {
return delegate.getColumn("gene_src_strain", DelegatingStrColumn::new);
}
/**
* The tissue of the natural organism from which the gene was
* obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcTissue() {
return delegate.getColumn("gene_src_tissue", DelegatingStrColumn::new);
}
/**
* The subcellular fraction of the tissue of the natural organism
* from which the gene was obtained.
* @return StrColumn
*/
public StrColumn getGeneSrcTissueFraction() {
return delegate.getColumn("gene_src_tissue_fraction", DelegatingStrColumn::new);
}
/**
* The genus of the organism that served as host for the production
* of the entity.
* @return StrColumn
*/
public StrColumn getHostOrgGenus() {
return delegate.getColumn("host_org_genus", DelegatingStrColumn::new);
}
/**
* The species of the organism that served as host for the
* production of the entity.
* @return StrColumn
*/
public StrColumn getHostOrgSpecies() {
return delegate.getColumn("host_org_species", DelegatingStrColumn::new);
}
/**
* A domain or fragment of the molecule.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcFragment() {
return delegate.getColumn("pdbx_gene_src_fragment", DelegatingStrColumn::new);
}
/**
* Identifies the gene.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcGene() {
return delegate.getColumn("pdbx_gene_src_gene", DelegatingStrColumn::new);
}
/**
* Scientific name of the organism.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcScientificName() {
return delegate.getColumn("pdbx_gene_src_scientific_name", DelegatingStrColumn::new);
}
/**
* Identifies the variant.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcVariant() {
return delegate.getColumn("pdbx_gene_src_variant", DelegatingStrColumn::new);
}
/**
* The specific line of cells.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcCellLine() {
return delegate.getColumn("pdbx_gene_src_cell_line", DelegatingStrColumn::new);
}
/**
* American Type Culture Collection tissue culture number.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcAtcc() {
return delegate.getColumn("pdbx_gene_src_atcc", DelegatingStrColumn::new);
}
/**
* Organized group of tissues that carries on a specialized function.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcOrgan() {
return delegate.getColumn("pdbx_gene_src_organ", DelegatingStrColumn::new);
}
/**
* Organized structure within cell.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcOrganelle() {
return delegate.getColumn("pdbx_gene_src_organelle", DelegatingStrColumn::new);
}
/**
* The source plasmid.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcPlasmid() {
return delegate.getColumn("pdbx_gene_src_plasmid", DelegatingStrColumn::new);
}
/**
* The source plasmid.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcPlasmidName() {
return delegate.getColumn("pdbx_gene_src_plasmid_name", DelegatingStrColumn::new);
}
/**
* Cell type.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcCell() {
return delegate.getColumn("pdbx_gene_src_cell", DelegatingStrColumn::new);
}
/**
* Identifies the location inside (or outside) the cell.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcCellularLocation() {
return delegate.getColumn("pdbx_gene_src_cellular_location", DelegatingStrColumn::new);
}
/**
* Specific gene which expressed the molecule.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgGene() {
return delegate.getColumn("pdbx_host_org_gene", DelegatingStrColumn::new);
}
/**
* Specific organ which expressed the molecule.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgOrgan() {
return delegate.getColumn("pdbx_host_org_organ", DelegatingStrColumn::new);
}
/**
* Specific organelle which expressed the molecule.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgOrganelle() {
return delegate.getColumn("pdbx_host_org_organelle", DelegatingStrColumn::new);
}
/**
* Identifies the location inside (or outside) the cell which
* expressed the molecule.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgCellularLocation() {
return delegate.getColumn("pdbx_host_org_cellular_location", DelegatingStrColumn::new);
}
/**
* The strain of the organism in which the entity was
* expressed.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgStrain() {
return delegate.getColumn("pdbx_host_org_strain", DelegatingStrColumn::new);
}
/**
* The fraction of the tissue which expressed the
* molecule.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgTissueFraction() {
return delegate.getColumn("pdbx_host_org_tissue_fraction", DelegatingStrColumn::new);
}
/**
* Information on the source which is not given elsewhere.
* @return StrColumn
*/
public StrColumn getPdbxDescription() {
return delegate.getColumn("pdbx_description", DelegatingStrColumn::new);
}
/**
* The common name of the organism that served as host for the
* production of the entity. Where full details of the protein
* production are available it would be expected that this item
* be derived from _entity_src_gen_express.host_org_common_name
* or via _entity_src_gen_express.host_org_tax_id
* @return StrColumn
*/
public StrColumn getHostOrgCommonName() {
return delegate.getColumn("host_org_common_name", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the organism that served as
* host for the production of the entity. Where full details of
* the protein production are available it would be expected that
* this item would derived from _entity_src_gen_express.host_org_details
* @return StrColumn
*/
public StrColumn getHostOrgDetails() {
return delegate.getColumn("host_org_details", DelegatingStrColumn::new);
}
/**
* The strain of the organism in which the entity was expressed.
* Where full details of the protein production are available
* it would be expected that this item be derived from
* _entity_src_gen_express.host_org_strain or via
* _entity_src_gen_express.host_org_tax_id
* @return StrColumn
*/
public StrColumn getHostOrgStrain() {
return delegate.getColumn("host_org_strain", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the plasmid that produced the
* entity in the host organism. Where full details of the protein
* production are available it would be expected that this item
* would be derived from _pdbx_construct.details of the construct
* pointed to from _entity_src_gen_express.plasmid_id.
* @return StrColumn
*/
public StrColumn getPlasmidDetails() {
return delegate.getColumn("plasmid_details", DelegatingStrColumn::new);
}
/**
* The name of the plasmid that produced the entity in the host
* organism. Where full details of the protein production are available
* it would be expected that this item would be derived from
* _pdbx_construct.name of the construct pointed to from
* _entity_src_gen_express.plasmid_id.
* @return StrColumn
*/
public StrColumn getPlasmidName() {
return delegate.getColumn("plasmid_name", DelegatingStrColumn::new);
}
/**
* Variant of the organism used as the expression system. Where
* full details of the protein production are available it would
* be expected that this item be derived from
* entity_src_gen_express.host_org_variant or via
* _entity_src_gen_express.host_org_tax_id
* @return StrColumn
*/
public StrColumn getPdbxHostOrgVariant() {
return delegate.getColumn("pdbx_host_org_variant", DelegatingStrColumn::new);
}
/**
* A specific line of cells used as the expression system. Where
* full details of the protein production are available it would
* be expected that this item would be derived from
* entity_src_gen_express.host_org_cell_line
* @return StrColumn
*/
public StrColumn getPdbxHostOrgCellLine() {
return delegate.getColumn("pdbx_host_org_cell_line", DelegatingStrColumn::new);
}
/**
* Americal Tissue Culture Collection of the expression system. Where
* full details of the protein production are available it would
* be expected that this item would be derived from
* _entity_src_gen_express.host_org_culture_collection
* @return StrColumn
*/
public StrColumn getPdbxHostOrgAtcc() {
return delegate.getColumn("pdbx_host_org_atcc", DelegatingStrColumn::new);
}
/**
* Culture collection of the expression system. Where
* full details of the protein production are available it would
* be expected that this item would be derived somehwere, but
* exactly where is not clear.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgCultureCollection() {
return delegate.getColumn("pdbx_host_org_culture_collection", DelegatingStrColumn::new);
}
/**
* Cell type from which the gene is derived. Where
* entity.target_id is provided this should be derived from
* details of the target.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgCell() {
return delegate.getColumn("pdbx_host_org_cell", DelegatingStrColumn::new);
}
/**
* The scientific name of the organism that served as host for the
* production of the entity. Where full details of the protein
* production are available it would be expected that this item
* would be derived from _entity_src_gen_express.host_org_scientific_name
* or via _entity_src_gen_express.host_org_tax_id
* @return StrColumn
*/
public StrColumn getPdbxHostOrgScientificName() {
return delegate.getColumn("pdbx_host_org_scientific_name", DelegatingStrColumn::new);
}
/**
* The specific tissue which expressed the molecule. Where full details
* of the protein production are available it would be expected that this
* item would be derived from _entity_src_gen_express.host_org_tissue
* @return StrColumn
*/
public StrColumn getPdbxHostOrgTissue() {
return delegate.getColumn("pdbx_host_org_tissue", DelegatingStrColumn::new);
}
/**
* Identifies the vector used. Where full details of the protein
* production are available it would be expected that this item
* would be derived from _entity_src_gen_clone.vector_name.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgVector() {
return delegate.getColumn("pdbx_host_org_vector", DelegatingStrColumn::new);
}
/**
* Identifies the type of vector used (plasmid, virus, or cosmid).
* Where full details of the protein production are available it
* would be expected that this item would be derived from
* _entity_src_gen_express.vector_type.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgVectorType() {
return delegate.getColumn("pdbx_host_org_vector_type", DelegatingStrColumn::new);
}
/**
* A unique identifier for the expression system. This
* should be extracted from a local list of expression
* systems.
* @return StrColumn
*/
public StrColumn getExpressionSystemId() {
return delegate.getColumn("expression_system_id", DelegatingStrColumn::new);
}
/**
* A string to indicate the life-cycle or cell development
* cycle in which the gene is expressed and the mature
* protein is active.
* @return StrColumn
*/
public StrColumn getGeneSrcDevStage() {
return delegate.getColumn("gene_src_dev_stage", DelegatingStrColumn::new);
}
/**
* A pointer to _pdbx_construct.id in the PDBX_CONSTRUCT category.
* The indentified sequence is the initial construct.
* @return StrColumn
*/
public StrColumn getStartConstructId() {
return delegate.getColumn("start_construct_id", DelegatingStrColumn::new);
}
/**
* NCBI Taxonomy identifier for the gene source organism.
*
* Reference:
*
* Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD,
* Tatusova TA, Rapp BA (2000). Database resources of the National
* Center for Biotechnology Information. Nucleic Acids Res 2000 Jan
* 1;28(1):10-4
*
* Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA,
* Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcNcbiTaxonomyId() {
return delegate.getColumn("pdbx_gene_src_ncbi_taxonomy_id", DelegatingStrColumn::new);
}
/**
* NCBI Taxonomy identifier for the expression system organism.
*
* Reference:
*
* Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD,
* Tatusova TA, Rapp BA (2000). Database resources of the National
* Center for Biotechnology Information. Nucleic Acids Res 2000 Jan
* 1;28(1):10-4
*
* Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA,
* Wheeler DL (2000). GenBank. Nucleic Acids Res 2000 Jan 1;28(1):15-18.
* @return StrColumn
*/
public StrColumn getPdbxHostOrgNcbiTaxonomyId() {
return delegate.getColumn("pdbx_host_org_ncbi_taxonomy_id", DelegatingStrColumn::new);
}
/**
* This data item is an ordinal identifier for entity_src_gen data records.
* @return IntColumn
*/
public IntColumn getPdbxSrcId() {
return delegate.getColumn("pdbx_src_id", DelegatingIntColumn::new);
}
/**
* This data item identifies cases in which an alternative source
* modeled.
* @return StrColumn
*/
public StrColumn getPdbxAltSourceFlag() {
return delegate.getColumn("pdbx_alt_source_flag", DelegatingStrColumn::new);
}
/**
* This data item povides additional information about the sequence type.
* @return StrColumn
*/
public StrColumn getPdbxSeqType() {
return delegate.getColumn("pdbx_seq_type", DelegatingStrColumn::new);
}
/**
* The beginning polymer sequence position for the polymer section corresponding
* to this source.
*
* A reference to the sequence position in the entity_poly category.
* @return IntColumn
*/
public IntColumn getPdbxBegSeqNum() {
return delegate.getColumn("pdbx_beg_seq_num", DelegatingIntColumn::new);
}
/**
* The ending polymer sequence position for the polymer section corresponding
* to this source.
*
* A reference to the sequence position in the entity_poly category.
* @return IntColumn
*/
public IntColumn getPdbxEndSeqNum() {
return delegate.getColumn("pdbx_end_seq_num", DelegatingIntColumn::new);
}
/**
* Culture collection identifier.
* @return StrColumn
*/
public StrColumn getPdbxGeneSrcCultureCollection() {
return delegate.getColumn("pdbx_gene_src_culture_collection", DelegatingStrColumn::new);
}
}
