org.rcsb.cif.schema.mm.Ihm2demClassAverageFitting Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the IHM_2DEM_CLASS_AVERAGE_FITTING category records the
* details of the fitting of the model to the 2DEM class averages
* used in the IHM modeling. The following conventions are recommended
* while generating the rotation matrix and translation vector for
* transformation.
*
* - The model is rotated and translated to fit to the 2DEM image.
* - The 2DEM image should be in the XY plane.
* - The lower left image corner (image pixel index 0,0) should be at x,y,z = (0,0,0).
* - The 2D image is scaled by the _ihm_2dem_class_average_restraint.pixel_size_width
* and _ihm_2dem_class_average_restraint.pixel_size_height from the
* IHM_2DEM_CLASS_AVERAGE_RESTRAINT table.
* - The transformation is applied after the scaling and hence the translation vector
* should account for the scaling.
* - There are no specifications for Z translations i.e., how far the image should be
* from the model while projecting. It may be set to zero.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class Ihm2demClassAverageFitting extends DelegatingCategory {
public Ihm2demClassAverageFitting(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "restraint_id":
return getRestraintId();
case "model_id":
return getModelId();
case "cross_correlation_coefficient":
return getCrossCorrelationCoefficient();
case "rot_matrix[1][1]":
return getRotMatrix11();
case "rot_matrix[2][1]":
return getRotMatrix21();
case "rot_matrix[3][1]":
return getRotMatrix31();
case "rot_matrix[1][2]":
return getRotMatrix12();
case "rot_matrix[2][2]":
return getRotMatrix22();
case "rot_matrix[3][2]":
return getRotMatrix32();
case "rot_matrix[1][3]":
return getRotMatrix13();
case "rot_matrix[2][3]":
return getRotMatrix23();
case "rot_matrix[3][3]":
return getRotMatrix33();
case "tr_vector[1]":
return getTrVector1();
case "tr_vector[2]":
return getTrVector2();
case "tr_vector[3]":
return getTrVector3();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for the 2dem class average fitting data.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* Identifier to the 2dem class average restraint.
* This data item is a pointer to the _ihm_2dem_class_average_restraint.id in the
* IHM_2DEM_CLASS_AVERAGE_RESTRAINT category.
* @return IntColumn
*/
public IntColumn getRestraintId() {
return delegate.getColumn("restraint_id", DelegatingIntColumn::new);
}
/**
* The model number corresponding to the 2DEM fitting result presented.
* This data item is a pointer to _ihm_model_list.model_id in the
* IHM_MODEL_LIST category.
* @return IntColumn
*/
public IntColumn getModelId() {
return delegate.getColumn("model_id", DelegatingIntColumn::new);
}
/**
* The cross correlation coefficient corresponding to the model to image fitting.
* @return FloatColumn
*/
public FloatColumn getCrossCorrelationCoefficient() {
return delegate.getColumn("cross_correlation_coefficient", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix11() {
return delegate.getColumn("rot_matrix[1][1]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix21() {
return delegate.getColumn("rot_matrix[2][1]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix31() {
return delegate.getColumn("rot_matrix[3][1]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix12() {
return delegate.getColumn("rot_matrix[1][2]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix22() {
return delegate.getColumn("rot_matrix[2][2]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix32() {
return delegate.getColumn("rot_matrix[3][2]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix13() {
return delegate.getColumn("rot_matrix[1][3]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix23() {
return delegate.getColumn("rot_matrix[2][3]", DelegatingFloatColumn::new);
}
/**
* Data item of the rotation matrix used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getRotMatrix33() {
return delegate.getColumn("rot_matrix[3][3]", DelegatingFloatColumn::new);
}
/**
* Data item of the tranlation vector used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getTrVector1() {
return delegate.getColumn("tr_vector[1]", DelegatingFloatColumn::new);
}
/**
* Data item of the tranlation vector used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getTrVector2() {
return delegate.getColumn("tr_vector[2]", DelegatingFloatColumn::new);
}
/**
* Data item of the tranlation vector used in the fitting of the model to the image.
* @return FloatColumn
*/
public FloatColumn getTrVector3() {
return delegate.getColumn("tr_vector[3]", DelegatingFloatColumn::new);
}
}