org.rcsb.cif.schema.mm.IhmCrossLinkRestraint Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the IHM_CROSS_LINK_RESTRAINT category enumerates the
* implementation details of the chemical crosslinking restraints in
* the integrative modeling. This category holds the details of how
* the experimentally derived crosslinks are applied in the modeling.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmCrossLinkRestraint extends DelegatingCategory {
public IhmCrossLinkRestraint(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "group_id":
return getGroupId();
case "entity_id_1":
return getEntityId1();
case "entity_id_2":
return getEntityId2();
case "asym_id_1":
return getAsymId1();
case "asym_id_2":
return getAsymId2();
case "comp_id_1":
return getCompId1();
case "comp_id_2":
return getCompId2();
case "seq_id_1":
return getSeqId1();
case "seq_id_2":
return getSeqId2();
case "atom_id_1":
return getAtomId1();
case "atom_id_2":
return getAtomId2();
case "restraint_type":
return getRestraintType();
case "conditional_crosslink_flag":
return getConditionalCrosslinkFlag();
case "model_granularity":
return getModelGranularity();
case "distance_threshold":
return getDistanceThreshold();
case "psi":
return getPsi();
case "sigma_1":
return getSigma1();
case "sigma_2":
return getSigma2();
case "pseudo_site_flag":
return getPseudoSiteFlag();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for the cross link record.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* An identifier for a set of ambiguous cross-links.
* Handles implementation uncertainties related to multiple copies of subunit.
* This data item is a pointer to _ihm_cross_link_list.id in the
* IHM_CROSS_LINK_LIST category.
* @return IntColumn
*/
public IntColumn getGroupId() {
return delegate.getColumn("group_id", DelegatingIntColumn::new);
}
/**
* The entity identifier for the first monomer partner in the cross link
*
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.entity_id_1 in the IHM_CROSS_LINK_RESTRAINT category.
* @return StrColumn
*/
public StrColumn getEntityId1() {
return delegate.getColumn("entity_id_1", DelegatingStrColumn::new);
}
/**
* The entity identifier for the second monomer partner in the cross link
*
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.entity_id_2 in the IHM_CROSS_LINK_RESTRAINT category.
* @return StrColumn
*/
public StrColumn getEntityId2() {
return delegate.getColumn("entity_id_2", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the first monomer partner in the cross-link.
*
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASYM category.
* @return StrColumn
*/
public StrColumn getAsymId1() {
return delegate.getColumn("asym_id_1", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the second monomer partner in the cross-link.
*
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASYM category.
* @return StrColumn
*/
public StrColumn getAsymId2() {
return delegate.getColumn("asym_id_2", DelegatingStrColumn::new);
}
/**
* The component identifier for the first monomer partner in the cross link.
*
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.comp_id_1 in the IHM_CROSS_LINK_RESTRAINT category.
* @return StrColumn
*/
public StrColumn getCompId1() {
return delegate.getColumn("comp_id_1", DelegatingStrColumn::new);
}
/**
* The component identifier for the second monomer partner in the cross link.
*
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.comp_id_2 in the IHM_CROSS_LINK_RESTRAINT category.
* @return StrColumn
*/
public StrColumn getCompId2() {
return delegate.getColumn("comp_id_2", DelegatingStrColumn::new);
}
/**
* The sequence index for the first monomer partner in the cross link.
*
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.seq_id_1 in the IHM_CROSS_LINK_RESTRAINT category.
* @return IntColumn
*/
public IntColumn getSeqId1() {
return delegate.getColumn("seq_id_1", DelegatingIntColumn::new);
}
/**
* The sequence index for the second monomer partner in the cross link.
*
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category
* and the _ihm_cross_link_restraint.seq_id_2 in the IHM_CROSS_LINK_RESTRAINT category.
* @return IntColumn
*/
public IntColumn getSeqId2() {
return delegate.getColumn("seq_id_2", DelegatingIntColumn::new);
}
/**
* The atom identifier for the first monomer partner in the cross link.
* This data item is a pointer to _chem_comp_atom.atom_id in the
* CHEM_COMP_ATOM category.
* @return StrColumn
*/
public StrColumn getAtomId1() {
return delegate.getColumn("atom_id_1", DelegatingStrColumn::new);
}
/**
* The atom identifier for the second monomer partner in the cross link.
* This data item is a pointer to _chem_comp_atom.atom_id in the
* CHEM_COMP_ATOM category.
* @return StrColumn
*/
public StrColumn getAtomId2() {
return delegate.getColumn("atom_id_2", DelegatingStrColumn::new);
}
/**
* The type of the cross link restraint applied.
* @return StrColumn
*/
public StrColumn getRestraintType() {
return delegate.getColumn("restraint_type", DelegatingStrColumn::new);
}
/**
* The cross link conditionality.
* @return StrColumn
*/
public StrColumn getConditionalCrosslinkFlag() {
return delegate.getColumn("conditional_crosslink_flag", DelegatingStrColumn::new);
}
/**
* The coarse-graining information for the crosslink implementation.
* @return StrColumn
*/
public StrColumn getModelGranularity() {
return delegate.getColumn("model_granularity", DelegatingStrColumn::new);
}
/**
* The distance threshold applied to this crosslink in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceThreshold() {
return delegate.getColumn("distance_threshold", DelegatingFloatColumn::new);
}
/**
* The uncertainty in the crosslinking experimental data;
* may be approximated to the false positive rate.
* @return FloatColumn
*/
public FloatColumn getPsi() {
return delegate.getColumn("psi", DelegatingFloatColumn::new);
}
/**
* The uncertainty in the position of residue 1 in the crosslink
* arising due to the multi-scale nature of the model represention.
* @return FloatColumn
*/
public FloatColumn getSigma1() {
return delegate.getColumn("sigma_1", DelegatingFloatColumn::new);
}
/**
* The uncertainty in the position of residue 2 in the crosslink
* arising due to the multi-scale nature of the model represention.
* @return FloatColumn
*/
public FloatColumn getSigma2() {
return delegate.getColumn("sigma_2", DelegatingFloatColumn::new);
}
/**
* A flag indicating if the cross link involves a pseudo site that is
* not part of the model representation and hence will not be part
* of the model. However, it can be part of the input restraints.
* @return StrColumn
*/
public StrColumn getPseudoSiteFlag() {
return delegate.getColumn("pseudo_site_flag", DelegatingStrColumn::new);
}
}