org.rcsb.cif.schema.mm.IhmDerivedDistanceRestraint Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the IHM_DERIVED_DISTANCE_RESTRAINT category records the
* list of distance restraints used in the integrative modeling experiment.
* These distance redistance restraints may be derived from various kinds of experiments.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmDerivedDistanceRestraint extends DelegatingCategory {
public IhmDerivedDistanceRestraint(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "group_id":
return getGroupId();
case "feature_id_1":
return getFeatureId1();
case "feature_id_2":
return getFeatureId2();
case "group_conditionality":
return getGroupConditionality();
case "random_exclusion_fraction":
return getRandomExclusionFraction();
case "distance_lower_limit":
return getDistanceLowerLimit();
case "distance_upper_limit":
return getDistanceUpperLimit();
case "distance_lower_limit_esd":
return getDistanceLowerLimitEsd();
case "distance_upper_limit_esd":
return getDistanceUpperLimitEsd();
case "probability":
return getProbability();
case "restraint_type":
return getRestraintType();
case "mic_value":
return getMicValue();
case "distance_threshold_mean":
return getDistanceThresholdMean();
case "distance_threshold_esd":
return getDistanceThresholdEsd();
case "dataset_list_id":
return getDatasetListId();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for the derived distance restraint.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* An identifier to group the distance restraints.
* This can be the same as the _ihm_derived_distance_restraint.id in case
* the some of the restraints are not grouped.
* @return IntColumn
*/
public IntColumn getGroupId() {
return delegate.getColumn("group_id", DelegatingIntColumn::new);
}
/**
* The feature identifier for the first partner in the distance restraint.
* This data item is a pointer to _ihm_feature_list.feature_id in the
* IHM_FEATURE_LIST category.
* @return IntColumn
*/
public IntColumn getFeatureId1() {
return delegate.getColumn("feature_id_1", DelegatingIntColumn::new);
}
/**
* The feature identifier for the second partner in the distance restraint.
* This data item is a pointer to _ihm_feature_list.feature_id in the
* IHM_FEATURE_LIST category.
* @return IntColumn
*/
public IntColumn getFeatureId2() {
return delegate.getColumn("feature_id_2", DelegatingIntColumn::new);
}
/**
* If a group of atoms or residues are restrained, this data item defines
* the conditionality based on which the restraint is applied in the modeling.
* @return StrColumn
*/
public StrColumn getGroupConditionality() {
return delegate.getColumn("group_conditionality", DelegatingStrColumn::new);
}
/**
* The fraction of randomly excluded distance restraints during modeling.
* In HADDOCK, this is used along with ambiguous interface restraints (AIRs)
* to account for uncertainties in AIRs.
* @return FloatColumn
*/
public FloatColumn getRandomExclusionFraction() {
return delegate.getColumn("random_exclusion_fraction", DelegatingFloatColumn::new);
}
/**
* The lower limit to the distance threshold applied to this distance restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceLowerLimit() {
return delegate.getColumn("distance_lower_limit", DelegatingFloatColumn::new);
}
/**
* The upper limit to the distance threshold applied to this distance restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceUpperLimit() {
return delegate.getColumn("distance_upper_limit", DelegatingFloatColumn::new);
}
/**
* The estimated standard deviation of the lower limit distance threshold applied to this distance restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceLowerLimitEsd() {
return delegate.getColumn("distance_lower_limit_esd", DelegatingFloatColumn::new);
}
/**
* The estimated standard deviation of the upper limit distance threshold applied to this distance restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceUpperLimitEsd() {
return delegate.getColumn("distance_upper_limit_esd", DelegatingFloatColumn::new);
}
/**
* The real number that indicates the probability that the distance restraint
* is correct. This number should fall between 0.0 and 1.0.
* @return FloatColumn
*/
public FloatColumn getProbability() {
return delegate.getColumn("probability", DelegatingFloatColumn::new);
}
/**
* The type of distance restraint applied.
* @return StrColumn
*/
public StrColumn getRestraintType() {
return delegate.getColumn("restraint_type", DelegatingStrColumn::new);
}
/**
* The value of the Maximal Information Co-efficient (MIC), if applicable.
* MIC values are correlation measures derived from the genetic profiles
* and are used to derive restraint information from quantitative measurements
* of genetic interactions.
* @return FloatColumn
*/
public FloatColumn getMicValue() {
return delegate.getColumn("mic_value", DelegatingFloatColumn::new);
}
/**
* The distance threshold mean applied to the restraint.
* @return FloatColumn
*/
public FloatColumn getDistanceThresholdMean() {
return delegate.getColumn("distance_threshold_mean", DelegatingFloatColumn::new);
}
/**
* The estimated standard deviation of the distance threshold applied to the restraint.
* @return FloatColumn
*/
public FloatColumn getDistanceThresholdEsd() {
return delegate.getColumn("distance_threshold_esd", DelegatingFloatColumn::new);
}
/**
* Identifier to the input data from which the distance restraint is derived.
* This data item is a pointer to the _ihm_dataset_list.id in the
* IHM_DATASET_LIST category.
* This data item may not be applicable for all cases. For example, in case of
* ambiguous interface restraints where the interface residues are identified
* from multiple experiments, the reference to the _ihm_dataset_list.id is
* handled in the IHM_INTERFACE_RESIDUE_FEATURE category rather than here.
* @return IntColumn
*/
public IntColumn getDatasetListId() {
return delegate.getColumn("dataset_list_id", DelegatingIntColumn::new);
}
}