org.rcsb.cif.schema.mm.IhmPredictedContactRestraint Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the IHM_PREDICTED_CONTACT_RESTRAINT category records the
* list of predicted contacts used in the integrative modeling experiment.
* This has been adapted from the widely used CASP RR format
* (http://www.predictioncenter.org/casp8/index.cgi?page=format#RR).
* These contacts may be derived from various computational tools.
* The software information can be provided in the SOFTWARE category.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class IhmPredictedContactRestraint extends DelegatingCategory {
public IhmPredictedContactRestraint(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "group_id":
return getGroupId();
case "entity_description_1":
return getEntityDescription1();
case "entity_description_2":
return getEntityDescription2();
case "entity_id_1":
return getEntityId1();
case "entity_id_2":
return getEntityId2();
case "asym_id_1":
return getAsymId1();
case "asym_id_2":
return getAsymId2();
case "comp_id_1":
return getCompId1();
case "comp_id_2":
return getCompId2();
case "seq_id_1":
return getSeqId1();
case "seq_id_2":
return getSeqId2();
case "rep_atom_1":
return getRepAtom1();
case "rep_atom_2":
return getRepAtom2();
case "distance_lower_limit":
return getDistanceLowerLimit();
case "distance_upper_limit":
return getDistanceUpperLimit();
case "probability":
return getProbability();
case "restraint_type":
return getRestraintType();
case "model_granularity":
return getModelGranularity();
case "dataset_list_id":
return getDatasetListId();
case "software_id":
return getSoftwareId();
default:
return new DelegatingColumn(column);
}
}
/**
* A unique identifier for the predicted contact restraint.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* An identifier to group the predicted contacts.
* @return IntColumn
*/
public IntColumn getGroupId() {
return delegate.getColumn("group_id", DelegatingIntColumn::new);
}
/**
* A text description of molecular entity 1.
* @return StrColumn
*/
public StrColumn getEntityDescription1() {
return delegate.getColumn("entity_description_1", DelegatingStrColumn::new);
}
/**
* A text description of molecular entity 2.
* @return StrColumn
*/
public StrColumn getEntityDescription2() {
return delegate.getColumn("entity_description_2", DelegatingStrColumn::new);
}
/**
* The entity identifier for the first monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getEntityId1() {
return delegate.getColumn("entity_id_1", DelegatingStrColumn::new);
}
/**
* The entity identifier for the second monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.entity_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getEntityId2() {
return delegate.getColumn("entity_id_2", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the first monomer partner in the predicted contact.
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASYM category.
* @return StrColumn
*/
public StrColumn getAsymId1() {
return delegate.getColumn("asym_id_1", DelegatingStrColumn::new);
}
/**
* An asym/strand identifier for the second monomer partner in the predicted contact.
* This data item is a pointer to _struct_asym.id in the
* STRUCT_ASYM category.
* @return StrColumn
*/
public StrColumn getAsymId2() {
return delegate.getColumn("asym_id_2", DelegatingStrColumn::new);
}
/**
* The component identifier for the first monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getCompId1() {
return delegate.getColumn("comp_id_1", DelegatingStrColumn::new);
}
/**
* The component identifier for the second monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.mon_id in the ENTITY_POLY_SEQ category.
* @return StrColumn
*/
public StrColumn getCompId2() {
return delegate.getColumn("comp_id_2", DelegatingStrColumn::new);
}
/**
* The sequence index for the first monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getSeqId1() {
return delegate.getColumn("seq_id_1", DelegatingIntColumn::new);
}
/**
* The sequence index for the second monomer partner in the predicted contact.
* This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getSeqId2() {
return delegate.getColumn("seq_id_2", DelegatingIntColumn::new);
}
/**
* If _ihm_predicted_contact_restraint.model_granularity is by-residue, then indicate the atom
* used to represent the first monomer partner in three-dimension. Default is the C-alpha atom.
* @return StrColumn
*/
public StrColumn getRepAtom1() {
return delegate.getColumn("rep_atom_1", DelegatingStrColumn::new);
}
/**
* If _ihm_predicted_contact_restraint.model_granularity is by-residue, then indicate the atom
* used to represent the second monomer partner in three-dimension. Default is the C-alpha atom.
* @return StrColumn
*/
public StrColumn getRepAtom2() {
return delegate.getColumn("rep_atom_2", DelegatingStrColumn::new);
}
/**
* The lower limit to the distance threshold applied to this predicted contact restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceLowerLimit() {
return delegate.getColumn("distance_lower_limit", DelegatingFloatColumn::new);
}
/**
* The upper limit to the distance threshold applied to this predicted contact restraint
* in the integrative modeling task.
* @return FloatColumn
*/
public FloatColumn getDistanceUpperLimit() {
return delegate.getColumn("distance_upper_limit", DelegatingFloatColumn::new);
}
/**
* The real number that indicates the probability that the predicted distance restraint
* is correct. This number should fall between 0.0 and 1.0.
* @return FloatColumn
*/
public FloatColumn getProbability() {
return delegate.getColumn("probability", DelegatingFloatColumn::new);
}
/**
* The type of distance restraint applied.
* @return StrColumn
*/
public StrColumn getRestraintType() {
return delegate.getColumn("restraint_type", DelegatingStrColumn::new);
}
/**
* The granularity of the predicted contact as applied to the multi-scale model.
* @return StrColumn
*/
public StrColumn getModelGranularity() {
return delegate.getColumn("model_granularity", DelegatingStrColumn::new);
}
/**
* Identifier to the predicted contacts dataset.
* This data item is a pointer to the _ihm_dataset_list.id in the
* IHM_DATASET_LIST category.
* @return IntColumn
*/
public IntColumn getDatasetListId() {
return delegate.getColumn("dataset_list_id", DelegatingIntColumn::new);
}
/**
* Identifier to the software used to obtain the predicted contacts dataset.
* This data item is a pointer to the _software.pdbx_ordinal in the
* SOFTWARE category.
* @return IntColumn
*/
public IntColumn getSoftwareId() {
return delegate.getColumn("software_id", DelegatingIntColumn::new);
}
}