org.rcsb.cif.schema.mm.PdbxEntitySrcGenChrom Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* This category contains details for the chromatographic steps used in the
* purification of the protein.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenChrom extends DelegatingCategory {
public PdbxEntitySrcGenChrom(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "entity_id":
return getEntityId();
case "step_id":
return getStepId();
case "next_step_id":
return getNextStepId();
case "end_construct_id":
return getEndConstructId();
case "robot_id":
return getRobotId();
case "date":
return getDate();
case "column_type":
return getColumnType();
case "column_volume":
return getColumnVolume();
case "column_temperature":
return getColumnTemperature();
case "equilibration_buffer_id":
return getEquilibrationBufferId();
case "flow_rate":
return getFlowRate();
case "elution_buffer_id":
return getElutionBufferId();
case "elution_protocol":
return getElutionProtocol();
case "sample_prep_details":
return getSamplePrepDetails();
case "sample_volume":
return getSampleVolume();
case "sample_concentration":
return getSampleConcentration();
case "sample_conc_method":
return getSampleConcMethod();
case "volume_pooled_fractions":
return getVolumePooledFractions();
case "yield_pooled_fractions":
return getYieldPooledFractions();
case "yield_method":
return getYieldMethod();
case "post_treatment":
return getPostTreatment();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_entity_src_gen_chrom.entry_id uniquely identifies
* a sample consisting of one or more proteins whose structure is
* to be determined. This is a pointer to _entry.id. This item may
* be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_entity_src_gen_chrom.entity_id uniquely identifies
* each protein contained in the project target complex proteins whose
* structure is to be determined. This data item is a pointer to _entity.id
* in the ENTITY category. This item may be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* This item is the unique identifier for this chromatography step.
* @return IntColumn
*/
public IntColumn getStepId() {
return delegate.getColumn("step_id", DelegatingIntColumn::new);
}
/**
* This item unique identifier for the next production step. This allows
* a workflow to have multiple entry points leading to a single product.
* @return IntColumn
*/
public IntColumn getNextStepId() {
return delegate.getColumn("next_step_id", DelegatingIntColumn::new);
}
/**
* This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT
* category. The referenced sequence is expected to be the amino
* acid sequence of the expressed product after the
* chromatography step.
* @return StrColumn
*/
public StrColumn getEndConstructId() {
return delegate.getColumn("end_construct_id", DelegatingStrColumn::new);
}
/**
* This data item is a pointer to pdbx_robot_system.id
* in the PDBX_ROBOT_SYSTEM category.
* @return StrColumn
*/
public StrColumn getRobotId() {
return delegate.getColumn("robot_id", DelegatingStrColumn::new);
}
/**
* The date of production step.
* @return StrColumn
*/
public StrColumn getDate() {
return delegate.getColumn("date", DelegatingStrColumn::new);
}
/**
* The type of column used in this step.
* @return StrColumn
*/
public StrColumn getColumnType() {
return delegate.getColumn("column_type", DelegatingStrColumn::new);
}
/**
* The volume of the column used in this step.
* @return FloatColumn
*/
public FloatColumn getColumnVolume() {
return delegate.getColumn("column_volume", DelegatingFloatColumn::new);
}
/**
* The temperature in degrees celsius at which this column was run.
* @return FloatColumn
*/
public FloatColumn getColumnTemperature() {
return delegate.getColumn("column_temperature", DelegatingFloatColumn::new);
}
/**
* This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
* The referenced buffer is that in which the column was equilibrated.
* @return StrColumn
*/
public StrColumn getEquilibrationBufferId() {
return delegate.getColumn("equilibration_buffer_id", DelegatingStrColumn::new);
}
/**
* The rate at which the equilibration buffer flowed through the column.
* @return FloatColumn
*/
public FloatColumn getFlowRate() {
return delegate.getColumn("flow_rate", DelegatingFloatColumn::new);
}
/**
* This item is a pointer to pdbx_buffer.id in the PDBX_BUFFER category.
* The referenced buffer is that with which the protein was eluted.
* @return StrColumn
*/
public StrColumn getElutionBufferId() {
return delegate.getColumn("elution_buffer_id", DelegatingStrColumn::new);
}
/**
* Details of the elution protocol.
* @return StrColumn
*/
public StrColumn getElutionProtocol() {
return delegate.getColumn("elution_protocol", DelegatingStrColumn::new);
}
/**
* Details of the sample preparation prior to running the column.
* @return StrColumn
*/
public StrColumn getSamplePrepDetails() {
return delegate.getColumn("sample_prep_details", DelegatingStrColumn::new);
}
/**
* The volume of protein solution run on the column.
* @return FloatColumn
*/
public FloatColumn getSampleVolume() {
return delegate.getColumn("sample_volume", DelegatingFloatColumn::new);
}
/**
* The concentration of the protein solution put onto the column.
* @return FloatColumn
*/
public FloatColumn getSampleConcentration() {
return delegate.getColumn("sample_concentration", DelegatingFloatColumn::new);
}
/**
* The method used to determine the concentration of the protein solution put
* onto the column.
* @return StrColumn
*/
public StrColumn getSampleConcMethod() {
return delegate.getColumn("sample_conc_method", DelegatingStrColumn::new);
}
/**
* The total volume of all the fractions pooled to give the purified protein
* solution.
* @return FloatColumn
*/
public FloatColumn getVolumePooledFractions() {
return delegate.getColumn("volume_pooled_fractions", DelegatingFloatColumn::new);
}
/**
* The yield in milligrams of protein recovered in the pooled fractions.
* @return FloatColumn
*/
public FloatColumn getYieldPooledFractions() {
return delegate.getColumn("yield_pooled_fractions", DelegatingFloatColumn::new);
}
/**
* The method used to determine the yield
* @return StrColumn
*/
public StrColumn getYieldMethod() {
return delegate.getColumn("yield_method", DelegatingStrColumn::new);
}
/**
* Details of any post-chromatographic treatment of the protein sample.
* @return StrColumn
*/
public StrColumn getPostTreatment() {
return delegate.getColumn("post_treatment", DelegatingStrColumn::new);
}
}