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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* This category contains details for the EXPRESSION steps used in
* the overall protein production process. It is hoped that this category
* will cover all forms of cell-based expression by reading induction as
* induction/transformation/transfection.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxEntitySrcGenExpress extends DelegatingCategory {
public PdbxEntitySrcGenExpress(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "entity_id":
return getEntityId();
case "step_id":
return getStepId();
case "next_step_id":
return getNextStepId();
case "end_construct_id":
return getEndConstructId();
case "robot_id":
return getRobotId();
case "date":
return getDate();
case "promoter_type":
return getPromoterType();
case "plasmid_id":
return getPlasmidId();
case "vector_type":
return getVectorType();
case "N_terminal_seq_tag":
return getNTerminalSeqTag();
case "C_terminal_seq_tag":
return getCTerminalSeqTag();
case "host_org_scientific_name":
return getHostOrgScientificName();
case "host_org_common_name":
return getHostOrgCommonName();
case "host_org_variant":
return getHostOrgVariant();
case "host_org_strain":
return getHostOrgStrain();
case "host_org_tissue":
return getHostOrgTissue();
case "host_org_culture_collection":
return getHostOrgCultureCollection();
case "host_org_cell_line":
return getHostOrgCellLine();
case "host_org_tax_id":
return getHostOrgTaxId();
case "host_org_details":
return getHostOrgDetails();
case "culture_base_media":
return getCultureBaseMedia();
case "culture_additives":
return getCultureAdditives();
case "culture_volume":
return getCultureVolume();
case "culture_time":
return getCultureTime();
case "culture_temperature":
return getCultureTemperature();
case "inducer":
return getInducer();
case "inducer_concentration":
return getInducerConcentration();
case "induction_details":
return getInductionDetails();
case "multiplicity_of_infection":
return getMultiplicityOfInfection();
case "induction_timepoint":
return getInductionTimepoint();
case "induction_temperature":
return getInductionTemperature();
case "harvesting_details":
return getHarvestingDetails();
case "storage_details":
return getStorageDetails();
case "summary":
return getSummary();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_entity_src_gen_express.entry_id uniquely identifies
* a sample consisting of one or more proteins whose structure is
* to be determined. This is a pointer to _entry.id. This item may
* be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_entity_src_gen_express.entity_id uniquely identifies
* each protein contained in the project target complex proteins whose
* structure is to be determined. This data item is a pointer to _entity.id
* in the ENTITY category.
* This item may be a site dependent bar code.
* @return StrColumn
*/
public StrColumn getEntityId() {
return delegate.getColumn("entity_id", DelegatingStrColumn::new);
}
/**
* This item is the unique identifier for this expression step.
* @return IntColumn
*/
public IntColumn getStepId() {
return delegate.getColumn("step_id", DelegatingIntColumn::new);
}
/**
* This item unique identifier for the next production step. This allows
* a workflow to have multiple entry points leading to a single product.
* @return IntColumn
*/
public IntColumn getNextStepId() {
return delegate.getColumn("next_step_id", DelegatingIntColumn::new);
}
/**
* This item is a pointer to pdbx_construct.id in the PDBX_CONSTRUCT
* category. The referenced sequence is expected to be the amino
* acid sequence of the expressed product.
* @return StrColumn
*/
public StrColumn getEndConstructId() {
return delegate.getColumn("end_construct_id", DelegatingStrColumn::new);
}
/**
* This data item is a pointer to pdbx_robot_system.id
* in the PDBX_ROBOT_SYSTEM category.
* @return StrColumn
*/
public StrColumn getRobotId() {
return delegate.getColumn("robot_id", DelegatingStrColumn::new);
}
/**
* The date of production step.
* @return StrColumn
*/
public StrColumn getDate() {
return delegate.getColumn("date", DelegatingStrColumn::new);
}
/**
* The nature of the promoter controlling expression of the gene.
* @return StrColumn
*/
public StrColumn getPromoterType() {
return delegate.getColumn("promoter_type", DelegatingStrColumn::new);
}
/**
* This item is a pointer to _pdbx_construct.id in the
* PDBX_CONSTRUCT category. The referenced entry will contain
* the nucleotide sequence that is to be expressed, including tags.
* @return StrColumn
*/
public StrColumn getPlasmidId() {
return delegate.getColumn("plasmid_id", DelegatingStrColumn::new);
}
/**
* Identifies the type of vector used (plasmid, virus, or cosmid)
* in the expression system.
* @return StrColumn
*/
public StrColumn getVectorType() {
return delegate.getColumn("vector_type", DelegatingStrColumn::new);
}
/**
* Any N-terminal sequence tag as a string of one letter amino acid codes.
* @return StrColumn
*/
public StrColumn getNTerminalSeqTag() {
return delegate.getColumn("N_terminal_seq_tag", DelegatingStrColumn::new);
}
/**
* Any C-terminal sequence tag as a string of one letter amino acid codes
* @return StrColumn
*/
public StrColumn getCTerminalSeqTag() {
return delegate.getColumn("C_terminal_seq_tag", DelegatingStrColumn::new);
}
/**
* The scientific name of the organism that served as host for the
* expression system. It is expected that either this item or
* _pdbx_entity_src_gen_express.host_org_tax_id should be populated.
* @return StrColumn
*/
public StrColumn getHostOrgScientificName() {
return delegate.getColumn("host_org_scientific_name", DelegatingStrColumn::new);
}
/**
* The common name of the organism that served as host for the
* expression system. Where _pdbx_entity_src_gen_express.host_org_tax_id
* is populated it is expected that this item may be derived by
* look up against the taxonomy database.
* @return StrColumn
*/
public StrColumn getHostOrgCommonName() {
return delegate.getColumn("host_org_common_name", DelegatingStrColumn::new);
}
/**
* The vairant of the organism that served as host for the expression
* system. Where _pdbx_entity_src_gen_express.host_org_tax_id is
* populated it is expected that this item may be derived by a
* look up against the taxonomy database.
* @return StrColumn
*/
public StrColumn getHostOrgVariant() {
return delegate.getColumn("host_org_variant", DelegatingStrColumn::new);
}
/**
* The strain of the organism that served as host for the expression
* system. Where _pdbx_entity_src_gen_express.host_org_tax_id is
* populated it is expected that this item may be derived by a
* look up against the taxonomy database.
* @return StrColumn
*/
public StrColumn getHostOrgStrain() {
return delegate.getColumn("host_org_strain", DelegatingStrColumn::new);
}
/**
* The specific tissue which expressed the molecule.
* @return StrColumn
*/
public StrColumn getHostOrgTissue() {
return delegate.getColumn("host_org_tissue", DelegatingStrColumn::new);
}
/**
* Culture collection of the expression system
* @return StrColumn
*/
public StrColumn getHostOrgCultureCollection() {
return delegate.getColumn("host_org_culture_collection", DelegatingStrColumn::new);
}
/**
* A specific line of cells used as the expression system
* @return StrColumn
*/
public StrColumn getHostOrgCellLine() {
return delegate.getColumn("host_org_cell_line", DelegatingStrColumn::new);
}
/**
* The id for the NCBI taxonomy node corresponding to the organism that
* served as host for the expression system.
* @return StrColumn
*/
public StrColumn getHostOrgTaxId() {
return delegate.getColumn("host_org_tax_id", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the organism that served as
* host for the expression system.
* @return StrColumn
*/
public StrColumn getHostOrgDetails() {
return delegate.getColumn("host_org_details", DelegatingStrColumn::new);
}
/**
* The name of the base media in which the expression host was grown.
* @return StrColumn
*/
public StrColumn getCultureBaseMedia() {
return delegate.getColumn("culture_base_media", DelegatingStrColumn::new);
}
/**
* Any additives to the base media in which the expression host was grown.
* @return StrColumn
*/
public StrColumn getCultureAdditives() {
return delegate.getColumn("culture_additives", DelegatingStrColumn::new);
}
/**
* The volume of media in milliliters in which the expression host was grown.
* @return FloatColumn
*/
public FloatColumn getCultureVolume() {
return delegate.getColumn("culture_volume", DelegatingFloatColumn::new);
}
/**
* The time in hours for which the expression host was allowed to grow
* prior to induction/transformation/transfection.
* @return FloatColumn
*/
public FloatColumn getCultureTime() {
return delegate.getColumn("culture_time", DelegatingFloatColumn::new);
}
/**
* The temperature in degrees celsius at which the expression host was allowed
* to grow prior to induction/transformation/transfection.
* @return FloatColumn
*/
public FloatColumn getCultureTemperature() {
return delegate.getColumn("culture_temperature", DelegatingFloatColumn::new);
}
/**
* The chemical name of the inducing agent.
* @return StrColumn
*/
public StrColumn getInducer() {
return delegate.getColumn("inducer", DelegatingStrColumn::new);
}
/**
* Concentration of the inducing agent.
* @return FloatColumn
*/
public FloatColumn getInducerConcentration() {
return delegate.getColumn("inducer_concentration", DelegatingFloatColumn::new);
}
/**
* Details of induction/transformation/transfection.
* @return StrColumn
*/
public StrColumn getInductionDetails() {
return delegate.getColumn("induction_details", DelegatingStrColumn::new);
}
/**
* The multiplicity of infection for genes introduced by transfection, eg.
* for baculovirus-based expression.
* @return FloatColumn
*/
public FloatColumn getMultiplicityOfInfection() {
return delegate.getColumn("multiplicity_of_infection", DelegatingFloatColumn::new);
}
/**
* The time in hours after induction/transformation/transfection at which
* the optical density of the culture was measured.
* @return FloatColumn
*/
public FloatColumn getInductionTimepoint() {
return delegate.getColumn("induction_timepoint", DelegatingFloatColumn::new);
}
/**
* The temperature in celsius at which the induced/transformed/transfected
* cells were grown.
* @return FloatColumn
*/
public FloatColumn getInductionTemperature() {
return delegate.getColumn("induction_temperature", DelegatingFloatColumn::new);
}
/**
* Details of the harvesting protocol.
* @return StrColumn
*/
public StrColumn getHarvestingDetails() {
return delegate.getColumn("harvesting_details", DelegatingStrColumn::new);
}
/**
* Details of how the harvested culture was stored.
* @return StrColumn
*/
public StrColumn getStorageDetails() {
return delegate.getColumn("storage_details", DelegatingStrColumn::new);
}
/**
* Summary of the details of the expression steps used in protein production.
* @return StrColumn
*/
public StrColumn getSummary() {
return delegate.getColumn("summary", DelegatingStrColumn::new);
}
}
