org.rcsb.cif.schema.mm.PdbxNmrEnsembleRms Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Structural statistics are derived from molecular dynamics and simulated annealing
* programs.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxNmrEnsembleRms extends DelegatingCategory {
public PdbxNmrEnsembleRms(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "residue_range_begin":
return getResidueRangeBegin();
case "chain_range_begin":
return getChainRangeBegin();
case "residue_range_end":
return getResidueRangeEnd();
case "chain_range_end":
return getChainRangeEnd();
case "atom_type":
return getAtomType();
case "distance_rms_dev":
return getDistanceRmsDev();
case "distance_rms_dev_error":
return getDistanceRmsDevError();
case "covalent_bond_rms_dev":
return getCovalentBondRmsDev();
case "covalent_bond_rms_dev_error":
return getCovalentBondRmsDevError();
case "bond_angle_rms_dev":
return getBondAngleRmsDev();
case "bond_angle_rms_dev_error":
return getBondAngleRmsDevError();
case "improper_torsion_angle_rms_dev":
return getImproperTorsionAngleRmsDev();
case "improper_torsion_angle_rms_dev_error":
return getImproperTorsionAngleRmsDevError();
case "peptide_planarity_rms_dev":
return getPeptidePlanarityRmsDev();
case "peptide_planarity_rms_dev_error":
return getPeptidePlanarityRmsDevError();
case "dihedral_angles_rms_dev":
return getDihedralAnglesRmsDev();
case "dihedral_angles_rms_dev_error":
return getDihedralAnglesRmsDevError();
case "coord_average_rmsd_method":
return getCoordAverageRmsdMethod();
default:
return new DelegatingColumn(column);
}
}
/**
* '?'
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* Structure statistics are often calculated only over the well-ordered region(s)
* of the biopolymer. Portions of the macromolecule are often mobile and
* disordered, hence they are excluded in calculating the statistics. To define
* the range(s) over which the statistics are calculated, enter the beginning
* residue number(s): e.g. if the regions used were 5-32 and 41-69, enter 5,41
* @return IntColumn
*/
public IntColumn getResidueRangeBegin() {
return delegate.getColumn("residue_range_begin", DelegatingIntColumn::new);
}
/**
* The beginning chain id.
* @return StrColumn
*/
public StrColumn getChainRangeBegin() {
return delegate.getColumn("chain_range_begin", DelegatingStrColumn::new);
}
/**
* The ending residue number: e.g. 32,69.
* @return IntColumn
*/
public IntColumn getResidueRangeEnd() {
return delegate.getColumn("residue_range_end", DelegatingIntColumn::new);
}
/**
* The ending chain id:
* @return StrColumn
*/
public StrColumn getChainRangeEnd() {
return delegate.getColumn("chain_range_end", DelegatingStrColumn::new);
}
/**
* Statistics are often calculated over only some of the atoms,
* e.g. backbone, or heavy atoms. Describe which type of atoms are used for
* the statistical analysis.
* @return StrColumn
*/
public StrColumn getAtomType() {
return delegate.getColumn("atom_type", DelegatingStrColumn::new);
}
/**
* The distance rmsd to the mean structure for the ensemble of structures.
* @return FloatColumn
*/
public FloatColumn getDistanceRmsDev() {
return delegate.getColumn("distance_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error in the distance rmsd.
* @return FloatColumn
*/
public FloatColumn getDistanceRmsDevError() {
return delegate.getColumn("distance_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* The covalent bond rmsd to the target value for the ensemble.
* @return FloatColumn
*/
public FloatColumn getCovalentBondRmsDev() {
return delegate.getColumn("covalent_bond_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error in the covalent bond rmsd.
* @return FloatColumn
*/
public FloatColumn getCovalentBondRmsDevError() {
return delegate.getColumn("covalent_bond_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* The bond angle rmsd to the target values for the ensemble.
* @return FloatColumn
*/
public FloatColumn getBondAngleRmsDev() {
return delegate.getColumn("bond_angle_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error in the bond angle rmsd.
* @return FloatColumn
*/
public FloatColumn getBondAngleRmsDevError() {
return delegate.getColumn("bond_angle_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* The improper torsion angle rmsd to the target values for the ensemble.
* @return FloatColumn
*/
public FloatColumn getImproperTorsionAngleRmsDev() {
return delegate.getColumn("improper_torsion_angle_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error in the improper torsion angle rmsd.
* @return FloatColumn
*/
public FloatColumn getImproperTorsionAngleRmsDevError() {
return delegate.getColumn("improper_torsion_angle_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* The peptide planarity rmsd.
* @return FloatColumn
*/
public FloatColumn getPeptidePlanarityRmsDev() {
return delegate.getColumn("peptide_planarity_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error in the peptide planarity rmsd.
* @return FloatColumn
*/
public FloatColumn getPeptidePlanarityRmsDevError() {
return delegate.getColumn("peptide_planarity_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* The dihedral angle rmsd to the target values for the ensemble.
* @return FloatColumn
*/
public FloatColumn getDihedralAnglesRmsDev() {
return delegate.getColumn("dihedral_angles_rms_dev", DelegatingFloatColumn::new);
}
/**
* The error of the rmsd dihedral angles.
* @return FloatColumn
*/
public FloatColumn getDihedralAnglesRmsDevError() {
return delegate.getColumn("dihedral_angles_rms_dev_error", DelegatingFloatColumn::new);
}
/**
* Describe the method for calculating the coordinate average rmsd.
* @return StrColumn
*/
public StrColumn getCoordAverageRmsdMethod() {
return delegate.getColumn("coord_average_rmsd_method", DelegatingStrColumn::new);
}
}