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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PDBX_PHASING_MR category record details about
* molecular replacement.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxPhasingMR extends DelegatingCategory {
public PdbxPhasingMR(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "entry_id":
return getEntryId();
case "method_rotation":
return getMethodRotation();
case "d_res_high_rotation":
return getDResHighRotation();
case "d_res_low_rotation":
return getDResLowRotation();
case "sigma_F_rotation":
return getSigmaFRotation();
case "sigma_I_rotation":
return getSigmaIRotation();
case "reflns_percent_rotation":
return getReflnsPercentRotation();
case "method_translation":
return getMethodTranslation();
case "d_res_high_translation":
return getDResHighTranslation();
case "d_res_low_translation":
return getDResLowTranslation();
case "sigma_F_translation":
return getSigmaFTranslation();
case "sigma_I_translation":
return getSigmaITranslation();
case "reflns_percent_translation":
return getReflnsPercentTranslation();
case "correlation_coeff_Io_to_Ic":
return getCorrelationCoeffIoToIc();
case "correlation_coeff_Fo_to_Fc":
return getCorrelationCoeffFoToFc();
case "R_factor":
return getRFactor();
case "R_rigid_body":
return getRRigidBody();
case "packing":
return getPacking();
case "model_details":
return getModelDetails();
case "native_set_id":
return getNativeSetId();
case "d_res_high_fit":
return getDResHighFit();
case "d_res_low_fit":
return getDResLowFit();
case "zscore_rotation":
return getZscoreRotation();
case "LL_gain_rotation":
return getLLGainRotation();
case "zscore_translation":
return getZscoreTranslation();
case "LL_gain_translation":
return getLLGainTranslation();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_phasing_MR.entry_id identifies the data block.
* @return StrColumn
*/
public StrColumn getEntryId() {
return delegate.getColumn("entry_id", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_phasing_MR.method_rotation identifies the method
* used for rotation search. For example, the rotation method may be
* realspace, fastdirect, or direct.
* .
* @return StrColumn
*/
public StrColumn getMethodRotation() {
return delegate.getColumn("method_rotation", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_phasing_MR.d_res_high_rotation identifies
* the highest resolution used for rotation search.
* @return FloatColumn
*/
public FloatColumn getDResHighRotation() {
return delegate.getColumn("d_res_high_rotation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.d_res_low_rotation identifies
* the lowest resolution used for rotation search.
* @return FloatColumn
*/
public FloatColumn getDResLowRotation() {
return delegate.getColumn("d_res_low_rotation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.sigma_F_rotation identifies the
* sigma cut off of structure factor used for rotation search.
* @return FloatColumn
*/
public FloatColumn getSigmaFRotation() {
return delegate.getColumn("sigma_F_rotation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.sigma_I_rotation identifies the
* sigma cut off of intensity used for rotation search.
* @return FloatColumn
*/
public FloatColumn getSigmaIRotation() {
return delegate.getColumn("sigma_I_rotation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.reflns_percent_rotation identifies the
* completness of data used for rotation search.
* @return FloatColumn
*/
public FloatColumn getReflnsPercentRotation() {
return delegate.getColumn("reflns_percent_rotation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.method_translation identifies the method
* used for translation search. For example in CNS, the translation method
* may be "general" or "phased" with PC refinement target using
* "fastf2f2" "e2e2" "e1e1" "f2f2" "f1f1" "residual" "vector".
*
* .
* @return StrColumn
*/
public StrColumn getMethodTranslation() {
return delegate.getColumn("method_translation", DelegatingStrColumn::new);
}
/**
* The value of _pdbx_phasing_MR.d_res_high_translation identifies
* the highest resolution used for translation search.
* @return FloatColumn
*/
public FloatColumn getDResHighTranslation() {
return delegate.getColumn("d_res_high_translation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.d_res_low_translation identifies
* the lowest resolution used for translation search.
* @return FloatColumn
*/
public FloatColumn getDResLowTranslation() {
return delegate.getColumn("d_res_low_translation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.sigma_F_translation identifies the
* sigma cut off of structure factor used for translation search.
* @return FloatColumn
*/
public FloatColumn getSigmaFTranslation() {
return delegate.getColumn("sigma_F_translation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.sigma_I_translation identifies the
* sigma cut off of intensity used for translation search.
* @return FloatColumn
*/
public FloatColumn getSigmaITranslation() {
return delegate.getColumn("sigma_I_translation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.reflns_percent_translation identifies the
* completness of data used for translation search.
* @return FloatColumn
*/
public FloatColumn getReflnsPercentTranslation() {
return delegate.getColumn("reflns_percent_translation", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.correlation_coeff_Io_to_Ic identifies
* the correlation between the observed and the calculated intensity
* (~|F|^2) after rotation and translation.
* @return FloatColumn
*/
public FloatColumn getCorrelationCoeffIoToIc() {
return delegate.getColumn("correlation_coeff_Io_to_Ic", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc identifies
* the correlation between the observed and the calculated structure
* factor after rotation and translation.
* @return FloatColumn
*/
public FloatColumn getCorrelationCoeffFoToFc() {
return delegate.getColumn("correlation_coeff_Fo_to_Fc", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.R_factor identifies the R factor
* (defined as uasual) after rotation and translation.
* @return FloatColumn
*/
public FloatColumn getRFactor() {
return delegate.getColumn("R_factor", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.R_rigid_body identifies the R factor
* for rigid body refinement after rotation and translation.(In general,
* rigid body refinement has to be carried out after molecular
* replacement.
* @return FloatColumn
*/
public FloatColumn getRRigidBody() {
return delegate.getColumn("R_rigid_body", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.packing identifies the packing of
* search model in the unit cell. Too many crystallographic contacts
* may indicate a bad search.
* @return FloatColumn
*/
public FloatColumn getPacking() {
return delegate.getColumn("packing", DelegatingFloatColumn::new);
}
/**
* The value of _pdbx_phasing_MR.model_details records the details of
* model used. For example, the original model can be truncated by
* deleting side chains, doubtful parts, using the monomer if the
* original model was an oligomer. The search model may be one
* domain of a large molecule. What is the pdb IDs.
* @return StrColumn
*/
public StrColumn getModelDetails() {
return delegate.getColumn("model_details", DelegatingStrColumn::new);
}
/**
* The data set that was treated as the native in this
* experiment.
*
* This data item is a pointer to _phasing_set.id in the
* PHASING_SET category.
* @return StrColumn
*/
public StrColumn getNativeSetId() {
return delegate.getColumn("native_set_id", DelegatingStrColumn::new);
}
/**
* The highest resolution limit used for rigid body
* refinement after molecular replacement (MR) solution.
* @return FloatColumn
*/
public FloatColumn getDResHighFit() {
return delegate.getColumn("d_res_high_fit", DelegatingFloatColumn::new);
}
/**
* The lowest resolution limit used for rigid body
* refinement after molecular replacement (MR) solution.
* @return FloatColumn
*/
public FloatColumn getDResLowFit() {
return delegate.getColumn("d_res_low_fit", DelegatingFloatColumn::new);
}
/**
* It is computed by comparing the LLG values from the rotation
* search with LLG values for a set of random rotations. The mean and
* the RMS deviation from the mean are computed from the random set,
* then the Z-score for a search peak is defined as its LLG minus the
* mean, all divided by the RMS deviation. Read, R.J. (2001). "Pushing
* the boundaries of molecular replacement with maximum likelihood."
* Acta Cryst. D57, 1373-1382
* @return FloatColumn
*/
public FloatColumn getZscoreRotation() {
return delegate.getColumn("zscore_rotation", DelegatingFloatColumn::new);
}
/**
* The log-likelihood gain after rotation. Read, R.J. (2001). "Pushing
* the boundaries of molecular replacement with maximum likelihood."
* Acta Cryst. D57, 1373-1382
* @return FloatColumn
*/
public FloatColumn getLLGainRotation() {
return delegate.getColumn("LL_gain_rotation", DelegatingFloatColumn::new);
}
/**
* It is computed by comparing the LLG values from the translation
* search with LLG values for a set of random translations. The mean
* and the RMS deviation from the mean are computed from the random set,
* then the Z-score for a search peak is defined as its LLG minus
* the mean, all divided by the RMS deviation. Read, R.J. (2001). "Pushing
* the boundaries of molecular replacement with maximum likelihood."
* Acta Cryst. D57, 1373-1382
* @return FloatColumn
*/
public FloatColumn getZscoreTranslation() {
return delegate.getColumn("zscore_translation", DelegatingFloatColumn::new);
}
/**
* The log-likelihood gain after translation. Read, R.J. (2001). "Pushing
* the boundaries of molecular replacement with maximum likelihood."
* Acta Cryst. D57, 1373-1382
* @return FloatColumn
*/
public FloatColumn getLLGainTranslation() {
return delegate.getColumn("LL_gain_translation", DelegatingFloatColumn::new);
}
}
