org.rcsb.cif.schema.mm.PdbxReferenceEntityLink Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PDBX_REFERENCE_ENTITY_LINK category give details about
* the linkages between entities within reference molecules.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxReferenceEntityLink extends DelegatingCategory {
public PdbxReferenceEntityLink(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "link_id":
return getLinkId();
case "prd_id":
return getPrdId();
case "details":
return getDetails();
case "ref_entity_id_1":
return getRefEntityId1();
case "ref_entity_id_2":
return getRefEntityId2();
case "entity_seq_num_1":
return getEntitySeqNum1();
case "entity_seq_num_2":
return getEntitySeqNum2();
case "comp_id_1":
return getCompId1();
case "comp_id_2":
return getCompId2();
case "atom_id_1":
return getAtomId1();
case "atom_id_2":
return getAtomId2();
case "value_order":
return getValueOrder();
case "component_1":
return getComponent1();
case "component_2":
return getComponent2();
case "nonpoly_res_num_1":
return getNonpolyResNum1();
case "nonpoly_res_num_2":
return getNonpolyResNum2();
case "link_class":
return getLinkClass();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_reference_entity_link.link_id uniquely identifies
* linkages between entities with a molecule.
* @return IntColumn
*/
public IntColumn getLinkId() {
return delegate.getColumn("link_id", DelegatingIntColumn::new);
}
/**
* The value of _pdbx_reference_entity_link.prd_id is a reference
* _pdbx_reference_entity_list.prd_id in the PDBX_REFERENCE_ENTITY_LIST category.
* @return StrColumn
*/
public StrColumn getPrdId() {
return delegate.getColumn("prd_id", DelegatingStrColumn::new);
}
/**
* A description of special aspects of a linkage between
* chemical components in the structure.
* @return StrColumn
*/
public StrColumn getDetails() {
return delegate.getColumn("details", DelegatingStrColumn::new);
}
/**
* The reference entity id of the first of the two entities joined by the
* linkage.
*
* This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id
* in the PDBX_REFERENCE_ENTITY_LIST category.
* @return StrColumn
*/
public StrColumn getRefEntityId1() {
return delegate.getColumn("ref_entity_id_1", DelegatingStrColumn::new);
}
/**
* The reference entity id of the second of the two entities joined by the
* linkage.
*
* This data item is a pointer to _pdbx_reference_entity_list.ref_entity_id
* in the PDBX_REFERENCE_ENTITY_LIST category.
* @return StrColumn
*/
public StrColumn getRefEntityId2() {
return delegate.getColumn("ref_entity_id_2", DelegatingStrColumn::new);
}
/**
* For a polymer entity, the sequence number in the first of
* the two entities containing the linkage.
*
* This data item is a pointer to _pdbx_reference_entity_poly_seq.num
* in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getEntitySeqNum1() {
return delegate.getColumn("entity_seq_num_1", DelegatingIntColumn::new);
}
/**
* For a polymer entity, the sequence number in the second of
* the two entities containing the linkage.
*
* This data item is a pointer to _pdbx_reference_entity_poly_seq.num
* in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
* @return IntColumn
*/
public IntColumn getEntitySeqNum2() {
return delegate.getColumn("entity_seq_num_2", DelegatingIntColumn::new);
}
/**
* The component identifier in the first of the two entities containing the linkage.
*
* For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id
* in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
*
* For non-polymer entities, this data item is a pointer to
* _pdbx_reference_entity_nonpoly.chem_comp_id in the
* PDBX_REFERENCE_ENTITY_NONPOLY category.
* @return StrColumn
*/
public StrColumn getCompId1() {
return delegate.getColumn("comp_id_1", DelegatingStrColumn::new);
}
/**
* The component identifier in the second of the two entities containing the linkage.
*
* For polymer entities, this data item is a pointer to _pdbx_reference_entity_poly_seq.mon_id
* in the PDBX_REFERENCE_ENTITY_POLY_SEQ category.
*
* For non-polymer entities, this data item is a pointer to
* _pdbx_reference_entity_nonpoly.chem_comp_id in the
* PDBX_REFERENCE_ENTITY_NONPOLY category.
* @return StrColumn
*/
public StrColumn getCompId2() {
return delegate.getColumn("comp_id_2", DelegatingStrColumn::new);
}
/**
* The atom identifier/name in the first of the two entities containing the linkage.
* @return StrColumn
*/
public StrColumn getAtomId1() {
return delegate.getColumn("atom_id_1", DelegatingStrColumn::new);
}
/**
* The atom identifier/name in the second of the two entities containing the linkage.
* @return StrColumn
*/
public StrColumn getAtomId2() {
return delegate.getColumn("atom_id_2", DelegatingStrColumn::new);
}
/**
* The bond order target for the chemical linkage.
* @return StrColumn
*/
public StrColumn getValueOrder() {
return delegate.getColumn("value_order", DelegatingStrColumn::new);
}
/**
* The entity component identifier for the first of two entities containing the linkage.
* @return IntColumn
*/
public IntColumn getComponent1() {
return delegate.getColumn("component_1", DelegatingIntColumn::new);
}
/**
* The entity component identifier for the second of two entities containing the linkage.
* @return IntColumn
*/
public IntColumn getComponent2() {
return delegate.getColumn("component_2", DelegatingIntColumn::new);
}
/**
* The residue number for the first of two entities containing the linkage.
* @return StrColumn
*/
public StrColumn getNonpolyResNum1() {
return delegate.getColumn("nonpoly_res_num_1", DelegatingStrColumn::new);
}
/**
* The residue number for the second of two entities containing the linkage.
* @return StrColumn
*/
public StrColumn getNonpolyResNum2() {
return delegate.getColumn("nonpoly_res_num_2", DelegatingStrColumn::new);
}
/**
* A code indicating the entity types involved in the linkage.
* @return StrColumn
*/
public StrColumn getLinkClass() {
return delegate.getColumn("link_class", DelegatingStrColumn::new);
}
}