org.rcsb.cif.schema.mm.PdbxValidateRmsdBond Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PDBX_VALIDATE_RMSD_BOND category list the
* covalent bonds that have values which deviate from expected
* values by more than 6*rmsd.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxValidateRmsdBond extends DelegatingCategory {
public PdbxValidateRmsdBond(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "id":
return getId();
case "PDB_model_num":
return getPDBModelNum();
case "auth_asym_id_1":
return getAuthAsymId1();
case "auth_atom_id_1":
return getAuthAtomId1();
case "auth_comp_id_1":
return getAuthCompId1();
case "auth_seq_id_1":
return getAuthSeqId1();
case "auth_atom_id_2":
return getAuthAtomId2();
case "auth_asym_id_2":
return getAuthAsymId2();
case "auth_comp_id_2":
return getAuthCompId2();
case "auth_seq_id_2":
return getAuthSeqId2();
case "PDB_ins_code_1":
return getPDBInsCode1();
case "PDB_ins_code_2":
return getPDBInsCode2();
case "label_alt_id_1":
return getLabelAltId1();
case "label_alt_id_2":
return getLabelAltId2();
case "bond_deviation":
return getBondDeviation();
case "bond_value":
return getBondValue();
case "bond_target_value":
return getBondTargetValue();
case "bond_standard_deviation":
return getBondStandardDeviation();
case "linker_flag":
return getLinkerFlag();
default:
return new DelegatingColumn(column);
}
}
/**
* The value of _pdbx_validate_rmsd_bond.id must uniquely identify
* each item in the PDBX_VALIDATE_RMSD_BOND list.
* This is an integer serial number.
* @return IntColumn
*/
public IntColumn getId() {
return delegate.getColumn("id", DelegatingIntColumn::new);
}
/**
* The model number for the given bond
* @return IntColumn
*/
public IntColumn getPDBModelNum() {
return delegate.getColumn("PDB_model_num", DelegatingIntColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAsymId1() {
return delegate.getColumn("auth_asym_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_atom_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAtomId1() {
return delegate.getColumn("auth_atom_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthCompId1() {
return delegate.getColumn("auth_comp_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the first of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_seq_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthSeqId1() {
return delegate.getColumn("auth_seq_id_1", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_atom_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAtomId2() {
return delegate.getColumn("auth_atom_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAsymId2() {
return delegate.getColumn("auth_asym_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthCompId2() {
return delegate.getColumn("auth_comp_id_2", DelegatingStrColumn::new);
}
/**
* Part of the identifier of the second of the two atom sites
* that define the covalent bond.
*
* This data item is a pointer to _atom_site.auth_seq_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthSeqId2() {
return delegate.getColumn("auth_seq_id_2", DelegatingStrColumn::new);
}
/**
* Optional identifier of the first of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getPDBInsCode1() {
return delegate.getColumn("PDB_ins_code_1", DelegatingStrColumn::new);
}
/**
* Optional identifier of the second of the two atom sites that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getPDBInsCode2() {
return delegate.getColumn("PDB_ins_code_2", DelegatingStrColumn::new);
}
/**
* An optional identifier of the first of the two atoms that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.label_alt_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelAltId1() {
return delegate.getColumn("label_alt_id_1", DelegatingStrColumn::new);
}
/**
* An optional identifier of the second of the two atoms that
* define the covalent bond.
*
* This data item is a pointer to _atom_site.label_alt_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelAltId2() {
return delegate.getColumn("label_alt_id_2", DelegatingStrColumn::new);
}
/**
* The value of the deviation from ideal for the defined covalent
* bond for the two atoms defined.
* @return FloatColumn
*/
public FloatColumn getBondDeviation() {
return delegate.getColumn("bond_deviation", DelegatingFloatColumn::new);
}
/**
* The value of the bond length
* @return FloatColumn
*/
public FloatColumn getBondValue() {
return delegate.getColumn("bond_value", DelegatingFloatColumn::new);
}
/**
* The target value of the bond length
* @return FloatColumn
*/
public FloatColumn getBondTargetValue() {
return delegate.getColumn("bond_target_value", DelegatingFloatColumn::new);
}
/**
* The uncertaintiy in target value of the bond length expressed as a standard deviation.
* @return FloatColumn
*/
public FloatColumn getBondStandardDeviation() {
return delegate.getColumn("bond_standard_deviation", DelegatingFloatColumn::new);
}
/**
* A flag to indicate if the bond is between two residues
* @return StrColumn
*/
public StrColumn getLinkerFlag() {
return delegate.getColumn("linker_flag", DelegatingStrColumn::new);
}
}