org.rcsb.cif.schema.mm.PhasingMIRDerSite Maven / Gradle / Ivy
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PHASING_MIR_DER_SITE category record details
* about the heavy-atom sites in an MIR phasing experiment.
*
* This list may contain information from a number of different
* derivatives; _phasing_MIR_der_site.der_id indicates to which
* derivative a given record corresponds. (A derivative in this
* context does not necessarily equate with a data set; see the
* definition of the PHASING_MIR_DER category for a
* discussion of the meaning of derivative.)
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PhasingMIRDerSite extends DelegatingCategory {
public PhasingMIRDerSite(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "atom_type_symbol":
return getAtomTypeSymbol();
case "B_iso":
return getBIso();
case "B_iso_esd":
return getBIsoEsd();
case "Cartn_x":
return getCartnX();
case "Cartn_x_esd":
return getCartnXEsd();
case "Cartn_y":
return getCartnY();
case "Cartn_y_esd":
return getCartnYEsd();
case "Cartn_z":
return getCartnZ();
case "Cartn_z_esd":
return getCartnZEsd();
case "der_id":
return getDerId();
case "details":
return getDetails();
case "fract_x":
return getFractX();
case "fract_x_esd":
return getFractXEsd();
case "fract_y":
return getFractY();
case "fract_y_esd":
return getFractYEsd();
case "fract_z":
return getFractZ();
case "fract_z_esd":
return getFractZEsd();
case "id":
return getId();
case "occupancy":
return getOccupancy();
case "occupancy_anom":
return getOccupancyAnom();
case "occupancy_anom_su":
return getOccupancyAnomSu();
case "occupancy_iso":
return getOccupancyIso();
case "occupancy_iso_su":
return getOccupancyIsoSu();
default:
return new DelegatingColumn(column);
}
}
/**
* This data item is a pointer to _atom_type.symbol in the
* ATOM_TYPE category.
*
* The scattering factors referenced via this data item should be
* those used in the refinement of the heavy-atom data; in some
* cases this is the scattering factor for the single heavy
* atom, in other cases these are the scattering factors for an
* atomic cluster.
* @return StrColumn
*/
public StrColumn getAtomTypeSymbol() {
return delegate.getColumn("atom_type_symbol", DelegatingStrColumn::new);
}
/**
* Isotropic displacement parameter for this heavy-atom site in this
* derivative.
* @return FloatColumn
*/
public FloatColumn getBIso() {
return delegate.getColumn("B_iso", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.B_iso.
* @return FloatColumn
*/
public FloatColumn getBIsoEsd() {
return delegate.getColumn("B_iso_esd", DelegatingFloatColumn::new);
}
/**
* The x coordinate of this heavy-atom position in this derivative
* specified as orthogonal angstroms. The orthogonal Cartesian axes
* are related to the cell axes as specified by the description
* given in _atom_sites.Cartn_transform_axes.
* @return FloatColumn
*/
public FloatColumn getCartnX() {
return delegate.getColumn("Cartn_x", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.Cartn_x.
* @return FloatColumn
*/
public FloatColumn getCartnXEsd() {
return delegate.getColumn("Cartn_x_esd", DelegatingFloatColumn::new);
}
/**
* The y coordinate of this heavy-atom position in this derivative
* specified as orthogonal angstroms. The orthogonal Cartesian axes
* are related to the cell axes as specified by the description
* given in _atom_sites.Cartn_transform_axes.
* @return FloatColumn
*/
public FloatColumn getCartnY() {
return delegate.getColumn("Cartn_y", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.Cartn_y.
* @return FloatColumn
*/
public FloatColumn getCartnYEsd() {
return delegate.getColumn("Cartn_y_esd", DelegatingFloatColumn::new);
}
/**
* The z coordinate of this heavy-atom position in this derivative
* specified as orthogonal angstroms. The orthogonal Cartesian axes
* are related to the cell axes as specified by the description
* given in _atom_sites.Cartn_transform_axes.
* @return FloatColumn
*/
public FloatColumn getCartnZ() {
return delegate.getColumn("Cartn_z", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.Cartn_z.
* @return FloatColumn
*/
public FloatColumn getCartnZEsd() {
return delegate.getColumn("Cartn_z_esd", DelegatingFloatColumn::new);
}
/**
* This data item is a pointer to _phasing_MIR_der.id in the
* PHASING_MIR_DER category.
* @return StrColumn
*/
public StrColumn getDerId() {
return delegate.getColumn("der_id", DelegatingStrColumn::new);
}
/**
* A description of special aspects of the derivative site.
* @return StrColumn
*/
public StrColumn getDetails() {
return delegate.getColumn("details", DelegatingStrColumn::new);
}
/**
* The x coordinate of this heavy-atom position in this derivative
* specified as a fraction of _cell.length_a.
* @return FloatColumn
*/
public FloatColumn getFractX() {
return delegate.getColumn("fract_x", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.fract_x.
* @return FloatColumn
*/
public FloatColumn getFractXEsd() {
return delegate.getColumn("fract_x_esd", DelegatingFloatColumn::new);
}
/**
* The y coordinate of this heavy-atom position in this derivative
* specified as a fraction of _cell.length_b.
* @return FloatColumn
*/
public FloatColumn getFractY() {
return delegate.getColumn("fract_y", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.fract_y.
* @return FloatColumn
*/
public FloatColumn getFractYEsd() {
return delegate.getColumn("fract_y_esd", DelegatingFloatColumn::new);
}
/**
* The z coordinate of this heavy-atom position in this derivative
* specified as a fraction of _cell.length_c.
* @return FloatColumn
*/
public FloatColumn getFractZ() {
return delegate.getColumn("fract_z", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation)
* of _phasing_MIR_der_site.fract_z.
* @return FloatColumn
*/
public FloatColumn getFractZEsd() {
return delegate.getColumn("fract_z_esd", DelegatingFloatColumn::new);
}
/**
* The value of _phasing_MIR_der_site.id must uniquely identify each
* site in each derivative in the PHASING_MIR_DER_SITE list.
*
* The atom identifiers need not be unique over all sites in all
* derivatives; they need only be unique for each site in each
* derivative.
*
* Note that this item need not be a number; it can be any unique
* identifier.
* @return StrColumn
*/
public StrColumn getId() {
return delegate.getColumn("id", DelegatingStrColumn::new);
}
/**
* The fraction of the atom type present at this heavy-atom site
* in a given derivative. The sum of the occupancies of all the
* atom types at this site may not significantly exceed 1.0 unless
* it is a dummy site.
* @return FloatColumn
*/
public FloatColumn getOccupancy() {
return delegate.getColumn("occupancy", DelegatingFloatColumn::new);
}
/**
* The relative anomalous occupancy of the atom type
* present at this heavy-atom site in a given derivative.
* This atom occupancy will probably be on an arbitrary scale.
* @return FloatColumn
*/
public FloatColumn getOccupancyAnom() {
return delegate.getColumn("occupancy_anom", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation) of
* _phasing_MIR_der_site.occupancy_anom.
* @return FloatColumn
*/
public FloatColumn getOccupancyAnomSu() {
return delegate.getColumn("occupancy_anom_su", DelegatingFloatColumn::new);
}
/**
* The relative real isotropic occupancy of the atom type
* present at this heavy-atom site in a given derivative.
* This atom occupancy will probably be on an arbitrary scale.
* @return FloatColumn
*/
public FloatColumn getOccupancyIso() {
return delegate.getColumn("occupancy_iso", DelegatingFloatColumn::new);
}
/**
* The standard uncertainty (estimated standard deviation) of
* _phasing_MIR_der_site.occupancy_iso.
* @return FloatColumn
*/
public FloatColumn getOccupancyIsoSu() {
return delegate.getColumn("occupancy_iso_su", DelegatingFloatColumn::new);
}
}