Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance. Project price only 1 $
You can buy this project and download/modify it how often you want.
package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the PHASING_MIR_SHELL category record statistics
* for an isomorphous replacement phasing experiment.broken
* down into shells of resolution.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PhasingMIRShell extends DelegatingCategory {
public PhasingMIRShell(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "d_res_high":
return getDResHigh();
case "d_res_low":
return getDResLow();
case "FOM":
return getFOM();
case "FOM_acentric":
return getFOMAcentric();
case "FOM_centric":
return getFOMCentric();
case "loc":
return getLoc();
case "mean_phase":
return getMeanPhase();
case "power":
return getPower();
case "R_cullis":
return getRCullis();
case "R_kraut":
return getRKraut();
case "reflns":
return getReflns();
case "reflns_acentric":
return getReflnsAcentric();
case "reflns_anomalous":
return getReflnsAnomalous();
case "reflns_centric":
return getReflnsCentric();
case "pdbx_loc_centric":
return getPdbxLocCentric();
case "pdbx_loc_acentric":
return getPdbxLocAcentric();
case "pdbx_power_centric":
return getPdbxPowerCentric();
case "pdbx_power_acentric":
return getPdbxPowerAcentric();
case "pdbx_R_kraut_centric":
return getPdbxRKrautCentric();
case "pdbx_R_kraut_acentric":
return getPdbxRKrautAcentric();
case "pdbx_R_cullis_centric":
return getPdbxRCullisCentric();
case "pdbx_R_cullis_acentric":
return getPdbxRCullisAcentric();
default:
return new DelegatingColumn(column);
}
}
/**
* The lowest value for the interplanar spacings for the
* reflection data in this shell. This is called the highest
* resolution. Note that the resolution limits of shells in
* the items _phasing_MIR_shell.d_res_high and
* _phasing_MIR_shell.d_res_low are independent of the resolution
* limits of shells in the items _reflns_shell.d_res_high and
* _reflns_shell.d_res_low.
* @return FloatColumn
*/
public FloatColumn getDResHigh() {
return delegate.getColumn("d_res_high", DelegatingFloatColumn::new);
}
/**
* The highest value for the interplanar spacings for the
* reflection data in this shell. This is called the lowest
* resolution. Note that the resolution limits of shells in the
* items _phasing_MIR_shell.d_res_high and
* _phasing_MIR_shell.d_res_low are independent of the resolution
* limits of shells in the items _reflns_shell.d_res_high and
* _reflns_shell.d_res_low.
* @return FloatColumn
*/
public FloatColumn getDResLow() {
return delegate.getColumn("d_res_low", DelegatingFloatColumn::new);
}
/**
* The mean value of the figure of merit m for reflections in this
* shell.
*
* int P~alpha~ exp(i*alpha) dalpha
* m = --------------------------------
* int P~alpha~ dalpha
*
* P~alpha~ = the probability that the phase angle alpha is correct
*
* the integral is taken over the range alpha = 0 to 2 pi.
* @return FloatColumn
*/
public FloatColumn getFOM() {
return delegate.getColumn("FOM", DelegatingFloatColumn::new);
}
/**
* The mean value of the figure of merit m for acentric reflections
* in this shell.
*
* int P~alpha~ exp(i*alpha) dalpha
* m = --------------------------------
* int P~alpha~ dalpha
*
* P~a~ = the probability that the phase angle a is correct
*
* the integral is taken over the range alpha = 0 to 2 pi.
* @return FloatColumn
*/
public FloatColumn getFOMAcentric() {
return delegate.getColumn("FOM_acentric", DelegatingFloatColumn::new);
}
/**
* The mean value of the figure of merit m for centric reflections
* in this shell.
*
* int P~alpha~ exp(i*alpha) dalpha
* m = --------------------------------
* int P~alpha~ dalpha
*
* P~a~ = the probability that the phase angle a is correct
*
* the integral is taken over the range alpha = 0 to 2 pi.
* @return FloatColumn
*/
public FloatColumn getFOMCentric() {
return delegate.getColumn("FOM_centric", DelegatingFloatColumn::new);
}
/**
* The mean lack-of-closure error loc for reflections in this shell.
*
* loc = sum|Fph~obs~ - Fph~calc~|
*
* Fph~obs~ = the observed structure-factor amplitude of the
* derivative
* Fph~calc~ = the calculated structure-factor amplitude of the
* derivative
*
* sum is taken over the specified reflections
* @return FloatColumn
*/
public FloatColumn getLoc() {
return delegate.getColumn("loc", DelegatingFloatColumn::new);
}
/**
* The mean of the phase values for all reflections in this shell.
* @return FloatColumn
*/
public FloatColumn getMeanPhase() {
return delegate.getColumn("mean_phase", DelegatingFloatColumn::new);
}
/**
* The mean phasing power P for reflections in this shell.
*
* sum|Fh~calc~^2^|
* P = (----------------------------)^1/2^
* sum|Fph~obs~ - Fph~calc~|^2^
*
* Fph~obs~ = the observed structure-factor amplitude of the
* derivative
* Fph~calc~ = the calculated structure-factor amplitude of the
* derivative
* Fh~calc~ = the calculated structure-factor amplitude from the
* heavy-atom model
*
* sum is taken over the specified reflections
* @return FloatColumn
*/
public FloatColumn getPower() {
return delegate.getColumn("power", DelegatingFloatColumn::new);
}
/**
* Residual factor R~cullis~ for centric reflections in this shell.
*
* sum| |Fph~obs~ +/- Fp~obs~| - Fh~calc~ |
* R~cullis~ = ----------------------------------------
* sum|Fph~obs~ - Fp~obs~|
*
* Fp~obs~ = the observed structure-factor amplitude of the native
* Fph~obs~ = the observed structure-factor amplitude of the
* derivative
* Fh~calc~ = the calculated structure-factor amplitude from the
* heavy-atom model
*
* sum is taken over the specified reflections
*
* Ref: Cullis, A. F., Muirhead, H., Perutz, M. F., Rossmann, M. G.
* & North, A. C. T. (1961). Proc. R. Soc. London Ser. A,
* 265, 15-38.
* @return FloatColumn
*/
public FloatColumn getRCullis() {
return delegate.getColumn("R_cullis", DelegatingFloatColumn::new);
}
/**
* Residual factor R~kraut~ for general reflections in this shell.
*
* sum|Fph~obs~ - Fph~calc~|
* R~kraut~ = -------------------------
* sum|Fph~obs~|
*
* Fph~obs~ = the observed structure-factor amplitude of the
* derivative
* Fph~calc~ = the calculated structure-factor amplitude of the
* derivative
*
* sum is taken over the specified reflections
*
* Ref: Kraut, J., Sieker, L. C., High, D. F. & Freer, S. T.
* (1962). Proc. Natl Acad. Sci. USA, 48, 1417-1424.
* @return FloatColumn
*/
public FloatColumn getRKraut() {
return delegate.getColumn("R_kraut", DelegatingFloatColumn::new);
}
/**
* The number of reflections in this shell.
* @return IntColumn
*/
public IntColumn getReflns() {
return delegate.getColumn("reflns", DelegatingIntColumn::new);
}
/**
* The number of acentric reflections in this shell.
* @return IntColumn
*/
public IntColumn getReflnsAcentric() {
return delegate.getColumn("reflns_acentric", DelegatingIntColumn::new);
}
/**
* The number of anomalous reflections in this shell.
* @return IntColumn
*/
public IntColumn getReflnsAnomalous() {
return delegate.getColumn("reflns_anomalous", DelegatingIntColumn::new);
}
/**
* The number of centric reflections in this shell.
* @return IntColumn
*/
public IntColumn getReflnsCentric() {
return delegate.getColumn("reflns_centric", DelegatingIntColumn::new);
}
/**
* record lack of closure from centric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxLocCentric() {
return delegate.getColumn("pdbx_loc_centric", DelegatingFloatColumn::new);
}
/**
* record lack of closure from acentric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxLocAcentric() {
return delegate.getColumn("pdbx_loc_acentric", DelegatingFloatColumn::new);
}
/**
* record phasing power from centric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxPowerCentric() {
return delegate.getColumn("pdbx_power_centric", DelegatingFloatColumn::new);
}
/**
* record phasing power from acentric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxPowerAcentric() {
return delegate.getColumn("pdbx_power_acentric", DelegatingFloatColumn::new);
}
/**
* record R_Kraut from from centric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxRKrautCentric() {
return delegate.getColumn("pdbx_R_kraut_centric", DelegatingFloatColumn::new);
}
/**
* record R_kraut from from acentric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxRKrautAcentric() {
return delegate.getColumn("pdbx_R_kraut_acentric", DelegatingFloatColumn::new);
}
/**
* record R_Cullis from from centric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxRCullisCentric() {
return delegate.getColumn("pdbx_R_cullis_centric", DelegatingFloatColumn::new);
}
/**
* record R_Cullis from from acentric reflection for each shell.
* @return FloatColumn
*/
public FloatColumn getPdbxRCullisAcentric() {
return delegate.getColumn("pdbx_R_cullis_acentric", DelegatingFloatColumn::new);
}
}
