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package org.rcsb.cif.schema.mm;
import org.rcsb.cif.model.*;
import org.rcsb.cif.schema.*;
import javax.annotation.Generated;
/**
* Data items in the STRUCT_MON_PROT category record details about
* structural properties of a protein when analyzed at the monomer
* level. Analogous data items for nucleic acids are given in the
* STRUCT_MON_NUCL category. For items where the value of the
* property depends on the method employed to calculate it,
* details of the method of calculation are given using data items
* in the STRUCT_MON_DETAILS category.
*/
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructMonProt extends DelegatingCategory {
public StructMonProt(Category delegate) {
super(delegate);
}
@Override
protected Column createDelegate(String columnName, Column column) {
switch (columnName) {
case "chi1":
return getChi1();
case "chi2":
return getChi2();
case "chi3":
return getChi3();
case "chi4":
return getChi4();
case "chi5":
return getChi5();
case "details":
return getDetails();
case "label_alt_id":
return getLabelAltId();
case "label_asym_id":
return getLabelAsymId();
case "label_comp_id":
return getLabelCompId();
case "label_seq_id":
return getLabelSeqId();
case "auth_asym_id":
return getAuthAsymId();
case "auth_comp_id":
return getAuthCompId();
case "auth_seq_id":
return getAuthSeqId();
case "RSCC_all":
return getRSCCAll();
case "RSCC_main":
return getRSCCMain();
case "RSCC_side":
return getRSCCSide();
case "RSR_all":
return getRSRAll();
case "RSR_main":
return getRSRMain();
case "RSR_side":
return getRSRSide();
case "mean_B_all":
return getMeanBAll();
case "mean_B_main":
return getMeanBMain();
case "mean_B_side":
return getMeanBSide();
case "omega":
return getOmega();
case "phi":
return getPhi();
case "psi":
return getPsi();
default:
return new DelegatingColumn(column);
}
}
/**
* The value in degrees of the side-chain torsion angle chi1, for
* those residues containing such an angle.
* @return FloatColumn
*/
public FloatColumn getChi1() {
return delegate.getColumn("chi1", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the side-chain torsion angle chi2, for
* those residues containing such an angle.
* @return FloatColumn
*/
public FloatColumn getChi2() {
return delegate.getColumn("chi2", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the side-chain torsion angle chi3, for
* those residues containing such an angle.
* @return FloatColumn
*/
public FloatColumn getChi3() {
return delegate.getColumn("chi3", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the side-chain torsion angle chi4, for
* those residues containing such an angle.
* @return FloatColumn
*/
public FloatColumn getChi4() {
return delegate.getColumn("chi4", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the side-chain torsion angle chi5, for
* those residues containing such an angle.
* @return FloatColumn
*/
public FloatColumn getChi5() {
return delegate.getColumn("chi5", DelegatingFloatColumn::new);
}
/**
* A description of special aspects of the residue, its
* conformation, behaviour in refinement, or any other aspect that
* requires annotation.
* @return FloatColumn
*/
public FloatColumn getDetails() {
return delegate.getColumn("details", DelegatingFloatColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_sites_alt.id in the
* ATOM_SITES_ALT category.
* @return StrColumn
*/
public StrColumn getLabelAltId() {
return delegate.getColumn("label_alt_id", DelegatingStrColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.label_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelAsymId() {
return delegate.getColumn("label_asym_id", DelegatingStrColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.label_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getLabelCompId() {
return delegate.getColumn("label_comp_id", DelegatingStrColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.label_seq_id in the
* ATOM_SITE category.
* @return IntColumn
*/
public IntColumn getLabelSeqId() {
return delegate.getColumn("label_seq_id", DelegatingIntColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.auth_asym_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthAsymId() {
return delegate.getColumn("auth_asym_id", DelegatingStrColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.auth_comp_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthCompId() {
return delegate.getColumn("auth_comp_id", DelegatingStrColumn::new);
}
/**
* A component of the identifier for the monomer.
*
* This data item is a pointer to _atom_site.auth_seq_id in the
* ATOM_SITE category.
* @return StrColumn
*/
public StrColumn getAuthSeqId() {
return delegate.getColumn("auth_seq_id", DelegatingStrColumn::new);
}
/**
* The real-space (linear) correlation coefficient RSCC, as
* described by Jones et al. (1991), evaluated over all atoms
* in the monomer.
*
* sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>|
* RSCC = -------------------------------------------------
* [ sum|p~obs~ - <p~obs~> |^2^
* * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSCC. < > indicates an average and the
* sums are taken over all map grid points near the relevant atoms.
* The radius for including grid points in the calculation should
* also be given in _struct_mon_details.RSCC.
*
* Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M.
* (1991). Acta Cryst. A47, 110-119.
* @return FloatColumn
*/
public FloatColumn getRSCCAll() {
return delegate.getColumn("RSCC_all", DelegatingFloatColumn::new);
}
/**
* The real-space (linear) correlation coefficient RSCC, as
* described by Jones et al. (1991), evaluated over all atoms
* in the main chain of the monomer.
*
* sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>|
* RSCC = -------------------------------------------------
* [ sum|p~obs~ - <p~obs~> |^2^
* * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSCC. < > indicates an average and the
* sums are taken over all map grid points near the relevant atoms.
* The radius for including grid points in the calculation should
* also be given in _struct_mon_details.RSCC.
*
* Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M.
* (1991). Acta Cryst. A47, 110-119.
* @return FloatColumn
*/
public FloatColumn getRSCCMain() {
return delegate.getColumn("RSCC_main", DelegatingFloatColumn::new);
}
/**
* The real-space (linear) correlation coefficient RSCC, as
* described by Jones et al. (1991), evaluated over all atoms
* in the side chain of the monomer.
*
* sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>|
* RSCC = -------------------------------------------------
* [ sum|p~obs~ - <p~obs~> |^2^
* * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSCC. < > indicates an average and the
* sums are taken over all map grid points near the relevant atoms.
* The radius for including grid points in the calculation should
* also be given in _struct_mon_details.RSCC.
*
* Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M.
* (1991). Acta Cryst. A47, 110-119.
* @return FloatColumn
*/
public FloatColumn getRSCCSide() {
return delegate.getColumn("RSCC_side", DelegatingFloatColumn::new);
}
/**
* The real-space residual RSR, as described by Branden & Jones
* (1990), evaluated over all atoms in the monomer.
*
* sum|p~obs~ - p~calc~|
* RSR = ---------------------
* sum|p~obs~ + p~calc~|
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSR. The sums are taken over all map grid
* points near the relevant atoms. The radius for including grid
* points in the calculation should also be given in
* _struct_mon_details.RSR.
*
* Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343,
* 687-689.
* @return FloatColumn
*/
public FloatColumn getRSRAll() {
return delegate.getColumn("RSR_all", DelegatingFloatColumn::new);
}
/**
* The real-space residual RSR, as described by Branden & Jones
* (1990), evaluated over all atoms in the main chain of the
* monomer.
*
* sum|p~obs~ - p~calc~|
* RSR = ---------------------
* sum|p~obs~ + p~calc~|
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSR. The sums are taken over all map grid
* points near the relevant atoms. The radius for including grid
* points in the calculation should also be given in
* _struct_mon_details.RSR.
*
* Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343,
* 687-689.
* @return FloatColumn
*/
public FloatColumn getRSRMain() {
return delegate.getColumn("RSR_main", DelegatingFloatColumn::new);
}
/**
* The real-space residual RSR, as described by Branden & Jones
* (1990), evaluated over all atoms in the side chain of the
* monomer.
*
* sum|p~obs~ - p~calc~|
* RSR = ---------------------
* sum|p~obs~ + p~calc~|
*
* p~obs~ = the density in an 'experimental' map
* p~calc~ = the density in a 'calculated' map
*
* sum is taken over the specified grid points
*
* Details of how these maps were calculated should be given
* in _struct_mon_details.RSR. The sums are taken over all map grid
* points near the relevant atoms. The radius for including grid
* points in the calculation should also be given in
* _struct_mon_details.RSR.
*
* Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343,
* 687-689.
* @return FloatColumn
*/
public FloatColumn getRSRSide() {
return delegate.getColumn("RSR_side", DelegatingFloatColumn::new);
}
/**
* The mean value of the isotropic displacement parameter for all
* atoms in the monomer.
* @return FloatColumn
*/
public FloatColumn getMeanBAll() {
return delegate.getColumn("mean_B_all", DelegatingFloatColumn::new);
}
/**
* The mean value of the isotropic displacement parameter for atoms
* in the main chain of the monomer.
* @return FloatColumn
*/
public FloatColumn getMeanBMain() {
return delegate.getColumn("mean_B_main", DelegatingFloatColumn::new);
}
/**
* The mean value of the isotropic displacement parameter for atoms
* in the side chain of the monomer.
* @return FloatColumn
*/
public FloatColumn getMeanBSide() {
return delegate.getColumn("mean_B_side", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the main-chain torsion angle omega.
* @return FloatColumn
*/
public FloatColumn getOmega() {
return delegate.getColumn("omega", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the main-chain torsion angle phi.
* @return FloatColumn
*/
public FloatColumn getPhi() {
return delegate.getColumn("phi", DelegatingFloatColumn::new);
}
/**
* The value in degrees of the main-chain torsion angle psi.
* @return FloatColumn
*/
public FloatColumn getPsi() {
return delegate.getColumn("psi", DelegatingFloatColumn::new);
}
}
