testFlattening.test22.xml Maven / Gradle / Ivy

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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:comp="http://www.sbml.org/sbml/level3/version1/comp/version1" level="3" version="1" comp:required="true">
  <model>
    <listOfCompartments>
      <compartment id="C" size="1" constant="true">
        <comp:replacedBy comp:idRef="C" comp:submodelRef="sub1"/>
      </compartment>
    </listOfCompartments>
    <listOfSpecies>
      <species id="s1" compartment="C" initialAmount="0.001" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false">
        <comp:replacedBy comp:idRef="s1" comp:submodelRef="sub1"/>
      </species>
    </listOfSpecies>
    <listOfParameters>
      <parameter id="timeconv" value="60" constant="true"/>
      <parameter id="t1" value="1" constant="false">
        <comp:listOfReplacedElements>
          <comp:replacedElement comp:idRef="t1" comp:submodelRef="sub1"/>
        </comp:listOfReplacedElements>
      </parameter>
      <parameter id="t2" value="1" constant="false">
        <comp:listOfReplacedElements>
          <comp:replacedElement comp:idRef="t2" comp:submodelRef="sub1"/>
        </comp:listOfReplacedElements>
      </parameter>
      <parameter id="t3" value="1" constant="false">
        <comp:listOfReplacedElements>
          <comp:replacedElement comp:idRef="t3" comp:submodelRef="sub1"/>
        </comp:listOfReplacedElements>
      </parameter>
      <parameter id="t4" value="1" constant="false">
        <comp:listOfReplacedElements>
          <comp:replacedElement comp:idRef="t4" comp:submodelRef="sub1"/>
        </comp:listOfReplacedElements>
      </parameter>
      <parameter id="t5" value="1" constant="false">
        <comp:listOfReplacedElements>
          <comp:replacedElement comp:idRef="t5" comp:submodelRef="sub1"/>
        </comp:listOfReplacedElements>
      </parameter>
    </listOfParameters>
    <comp:listOfSubmodels>
      <comp:submodel comp:id="sub1" comp:modelRef="moddef1" comp:timeConversionFactor="timeconv"/>
    </comp:listOfSubmodels>
  </model>
  <comp:listOfModelDefinitions>
    <comp:modelDefinition id="moddef1">
      <listOfCompartments>
        <compartment id="C" size="1" constant="true"/>
      </listOfCompartments>
      <listOfSpecies>
        <species id="s1" compartment="C" initialAmount="0.001" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/>
      </listOfSpecies>
      <listOfParameters>
        <parameter id="t1" value="1" constant="false"/>
        <parameter id="t2" value="1" constant="false"/>
        <parameter id="t3" value="1" constant="false"/>
        <parameter id="t4" value="1" constant="false"/>
        <parameter id="t5" value="1" constant="false"/>
      </listOfParameters>
      <listOfInitialAssignments>
        <initialAssignment symbol="t2">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <cn type="integer"> 3 </cn>
            </apply>
          </math>
        </initialAssignment>
      </listOfInitialAssignments>
      <listOfRules>
        <rateRule variable="t1">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <apply>
                <divide/>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                <ci> t1 </ci>
              </apply>
              <cn type="integer"> 3 </cn>
            </apply>
          </math>
        </rateRule>
        <assignmentRule variable="t3">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
              <ci> t1 </ci>
              <cn type="integer"> 3 </cn>
            </apply>
          </math>
        </assignmentRule>
        <algebraicRule>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <minus/>
              <ci> t4 </ci>
              <apply>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
                <ci> t3 </ci>
                <apply>
                  <divide/>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                  <cn type="integer"> 2 </cn>
                </apply>
              </apply>
            </apply>
          </math>
        </algebraicRule>
      </listOfRules>
      <listOfConstraints>
        <constraint>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <lt/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <apply>
                <times/>
                <ci> t4 </ci>
                <ci> t5 </ci>
              </apply>
            </apply>
          </math>
        </constraint>
      </listOfConstraints>
      <listOfReactions>
        <reaction id="J0" reversible="true" fast="false">
          <listOfProducts>
            <speciesReference species="s1" constant="true"/>
          </listOfProducts>
          <kineticLaw>
            <math xmlns="http://www.w3.org/1998/Math/MathML">
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> t3 </ci>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                </apply>
                <apply>
                  <times/>
                  <ci> s1 </ci>
                  <apply>
                    <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
                    <ci> t5 </ci>
                    <cn type="e-notation"> 2 <sep/> -1 </cn>
                  </apply>
                </apply>
              </apply>
            </math>
          </kineticLaw>
        </reaction>
      </listOfReactions>
      <listOfEvents>
        <event useValuesFromTriggerTime="true">
          <trigger initialValue="true" persistent="true">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
              <apply>
                <gt/>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                <cn type="integer"> 3 </cn>
              </apply>
            </math>
          </trigger>
          <delay>
            <math xmlns="http://www.w3.org/1998/Math/MathML">
              <apply>
                <divide/>
                <cn type="integer"> 1 </cn>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              </apply>
            </math>
          </delay>
          <listOfEventAssignments>
            <eventAssignment variable="t5">
              <math xmlns="http://www.w3.org/1998/Math/MathML">
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              </math>
            </eventAssignment>
          </listOfEventAssignments>
        </event>
      </listOfEvents>
    </comp:modelDefinition>
  </comp:listOfModelDefinitions>
</sbml>