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testFlattening.test23_flat.xml Maven / Gradle / Ivy

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">
  <model>
    <listOfCompartments>
      <compartment id="sub1__C" size="1" constant="true"/>
    </listOfCompartments>
    <listOfSpecies>
      <species id="sub1__s1" compartment="sub1__C" initialAmount="1" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/>
    </listOfSpecies>
    <listOfParameters>
      <parameter id="timeconv" value="60" constant="true"/>
      <parameter id="extentconv" value="1000" constant="true"/>
      <parameter id="t1" value="1" constant="false"/>
      <parameter id="t2" value="1" constant="false"/>
      <parameter id="t3" value="1" constant="false"/>
      <parameter id="t4" value="1" constant="false"/>
      <parameter id="t5" value="1" constant="false"/>
    </listOfParameters>
    <listOfInitialAssignments>
      <initialAssignment symbol="t2">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <plus/>
            <apply>
              <divide/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <ci> timeconv </ci>
            </apply>
            <cn type="integer"> 3 </cn>
          </apply>
        </math>
      </initialAssignment>
    </listOfInitialAssignments>
    <listOfRules>
      <rateRule variable="t1">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <divide/>
            <apply>
              <plus/>
              <apply>
                <times/>
                <apply>
                  <divide/>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                  <ci> timeconv </ci>
                </apply>
                <ci> t1 </ci>
              </apply>
              <cn type="integer"> 3 </cn>
            </apply>
            <ci> timeconv </ci>
          </apply>
        </math>
      </rateRule>
      <assignmentRule variable="t3">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
            <ci> t1 </ci>
            <apply>
              <times/>
              <ci> timeconv </ci>
              <cn type="integer"> 3 </cn>
            </apply>
          </apply>
        </math>
      </assignmentRule>
      <algebraicRule>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <minus/>
            <ci> t4 </ci>
            <apply>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
              <ci> t3 </ci>
              <apply>
                <times/>
                <ci> timeconv </ci>
                <apply>
                  <divide/>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                  <ci> timeconv </ci>
                </apply>
              </apply>
            </apply>
          </apply>
        </math>
      </algebraicRule>
    </listOfRules>
    <listOfConstraints>
      <constraint>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <lt/>
            <apply>
              <divide/>
              <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
              <ci> timeconv </ci>
            </apply>
            <apply>
              <times/>
              <ci> t4 </ci>
              <ci> t5 </ci>
            </apply>
          </apply>
        </math>
      </constraint>
    </listOfConstraints>
    <listOfReactions>
      <reaction id="sub1__J0" reversible="true" fast="false">
        <listOfProducts>
          <speciesReference species="sub1__s1" constant="true"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <apply>
                <divide/>
                <ci> extentconv </ci>
                <ci> timeconv </ci>
              </apply>
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> sub1__s1 </ci>
                  <ci> t3 </ci>
                  <apply>
                    <divide/>
                    <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                    <ci> timeconv </ci>
                  </apply>
                </apply>
                <apply>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/delay"> delay </csymbol>
                  <ci> t5 </ci>
                  <apply>
                    <times/>
                    <ci> timeconv </ci>
                    <cn type="e-notation"> 2 <sep/> 4 </cn>
                  </apply>
                </apply>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
    </listOfReactions>
    <listOfEvents>
      <event useValuesFromTriggerTime="true">
        <trigger initialValue="true" persistent="true">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <gt/>
              <apply>
                <divide/>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                <ci> timeconv </ci>
              </apply>
              <cn type="integer"> 3 </cn>
            </apply>
          </math>
        </trigger>
        <delay>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> timeconv </ci>
              <apply>
                <divide/>
                <cn type="integer"> 1 </cn>
                <apply>
                  <divide/>
                  <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                  <ci> timeconv </ci>
                </apply>
              </apply>
            </apply>
          </math>
        </delay>
        <listOfEventAssignments>
          <eventAssignment variable="t5">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
              <apply>
                <divide/>
                <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
                <ci> timeconv </ci>
              </apply>
            </math>
          </eventAssignment>
        </listOfEventAssignments>
      </event>
    </listOfEvents>
  </model>
</sbml>