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• internalise_name_collision_single.xml

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testGathering.single_files.internalise_name_collision_single.xml Maven / Gradle / Ivy

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1"
	xmlns:comp="http://www.sbml.org/sbml/level3/version1/comp/version1" comp:required="true">
	<model>
		<comp:listOfSubmodels>
			<comp:submodel comp:id="internalA" comp:modelRef="a"/>
		</comp:listOfSubmodels>
	</model>
	<comp:listOfModelDefinitions>	
		<comp:modelDefinition id="b__c">
			<listOfCompartments>
				<compartment id="compartment" spatialDimensions="3" size="1" constant="true"/>
			</listOfCompartments>
			<listOfSpecies>
				<species id="metab1" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="metab2" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
			</listOfSpecies>
		</comp:modelDefinition>	
		<comp:modelDefinition id="a" name="b">
			<listOfCompartments>
				<compartment id="cytoplasm" spatialDimensions="3" size="1" constant="true"/>
			</listOfCompartments>
			<listOfSpecies>
				<species id="adp" compartment="cytoplasm" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"></species>
				<species id="atp" compartment="cytoplasm" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"></species>
				<species id="p" compartment="cytoplasm" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"></species>
			</listOfSpecies>
			<listOfReactions>
				<reaction id="a1" reversible="true" fast="false">
					<listOfReactants>
						<speciesReference species="atp" stoichiometry="1" constant="true"/>
					</listOfReactants>
					<listOfProducts>
						<speciesReference species="adp" stoichiometry="1" constant="true"/>
						<speciesReference species="p" stoichiometry="1" constant="true"/>
					</listOfProducts>
				</reaction>
			</listOfReactions>
			<comp:listOfSubmodels>
				<comp:submodel comp:id="internalC" comp:modelRef="b__c"/>
			</comp:listOfSubmodels>
		</comp:modelDefinition>
		<comp:modelDefinition id="b_c" name="linked">
			<listOfCompartments>
				<compartment id="compartment" spatialDimensions="3" size="1" constant="true"/>
			</listOfCompartments>
			<listOfSpecies>
				<species id="S" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="E" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="D" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="ES" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
			</listOfSpecies>
			<listOfReactions>
				<reaction id="J0" reversible="true" fast="false">
					<listOfReactants>
						<speciesReference species="S" stoichiometry="1" constant="true"/>
						<speciesReference species="E" stoichiometry="1" constant="true"/>
					</listOfReactants>
					<listOfProducts>
						<speciesReference species="ES" stoichiometry="1" constant="true"/>
					</listOfProducts>
				</reaction>
				<reaction id="J1" reversible="true" fast="false">
					<listOfReactants>
						<speciesReference species="ES" stoichiometry="1" constant="true"/>
					</listOfReactants>
					<listOfProducts>
						<speciesReference species="E" stoichiometry="1" constant="true"/>
						<speciesReference species="D" stoichiometry="1" constant="true"/>
					</listOfProducts>
				</reaction>
			</listOfReactions>
		</comp:modelDefinition>
	</comp:listOfModelDefinitions>
</sbml>