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• spec_example2_single.xml

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testGathering.single_files.spec_example2_single.xml Maven / Gradle / Ivy

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1"
	xmlns:comp="http://www.sbml.org/sbml/level3/version1/comp/version1" comp:required="true">
	<model>
		<listOfCompartments>
			<compartment id="compartment" spatialDimensions="3" size="1" constant="true">
				<comp:listOfReplacedElements>
					<comp:replacedElement comp:idRef="compartment" comp:submodelRef="A"/>
					<comp:replacedElement comp:idRef="compartment" comp:submodelRef="B"/>
				</comp:listOfReplacedElements>
			</compartment>
		</listOfCompartments>
		<listOfSpecies>
			<species id="S" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
				<comp:listOfReplacedElements>
					<comp:replacedElement comp:idRef="S" comp:submodelRef="A"/>
					<comp:replacedElement comp:idRef="S" comp:submodelRef="B"/>
				</comp:listOfReplacedElements>
			</species>
		</listOfSpecies>
		<comp:listOfSubmodels>
			<comp:submodel comp:id="A" comp:modelRef="ExtMod1"/>
			<comp:submodel comp:id="B" comp:modelRef="ExtMod1"/>
		</comp:listOfSubmodels>
	</model>
	<comp:listOfModelDefinitions>
		<comp:modelDefinition id="ExtMod1" name="linked">
			<listOfCompartments>
				<compartment id="compartment" spatialDimensions="3" size="1" constant="true"/>
			</listOfCompartments>
			<listOfSpecies>
				<species id="S" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="E" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="D" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
				<species id="ES" compartment="compartment" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
			</listOfSpecies>
			<listOfReactions>
				<reaction id="J0" reversible="true" fast="false">
					<listOfReactants>
						<speciesReference species="S" stoichiometry="1" constant="true"/>
						<speciesReference species="E" stoichiometry="1" constant="true"/>
					</listOfReactants>
					<listOfProducts>
						<speciesReference species="ES" stoichiometry="1" constant="true"/>
					</listOfProducts>
				</reaction>
				<reaction id="J1" reversible="true" fast="false">
					<listOfReactants>
						<speciesReference species="ES" stoichiometry="1" constant="true"/>
					</listOfReactants>
					<listOfProducts>
						<speciesReference species="E" stoichiometry="1" constant="true"/>
						<speciesReference species="D" stoichiometry="1" constant="true"/>
					</listOfProducts>
				</reaction>
			</listOfReactions>
		</comp:modelDefinition>
	</comp:listOfModelDefinitions>
</sbml>