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/*
* ----------------------------------------------------------------------------
* This file is part of JSBML. Please visit
* for the latest version of JSBML and more information about SBML.
*
* Copyright (C) 2009-2022 jointly by the following organizations:
* 1. The University of Tuebingen, Germany
* 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
* 3. The California Institute of Technology, Pasadena, CA, USA
* 4. The University of California, San Diego, La Jolla, CA, USA
* 5. The Babraham Institute, Cambridge, UK
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as .
* ----------------------------------------------------------------------------
*/
package org.sbml.jsbml.ext.spatial;
import java.text.MessageFormat;
import java.util.Map;
import org.apache.log4j.Logger;
import org.sbml.jsbml.PropertyUndefinedError;
import org.sbml.jsbml.util.StringTools;
import org.sbml.jsbml.xml.parsers.AbstractReaderWriter;
/**
* @author Alex Thomas
* @author Andreas Dräger
* @since 1.0
*/
public abstract class GeometryDefinition extends AbstractSpatialNamedSBase {
/**
* A {@link Logger} for this class.
*/
private static final transient Logger logger = Logger.getLogger(GeometryDefinition.class);
/**
* Generated serial version identifier.
*/
private static final long serialVersionUID = 211166389798247646L;
/**
*
*/
private Boolean isActive;
/**
*
*/
public GeometryDefinition() {
super();
}
/**
* @param gd
*/
public GeometryDefinition(GeometryDefinition gd) {
super(gd);
if (gd.isSetIsActive()) {
setIsActive(gd.getIsActive());
}
}
/**
* @param level
* @param version
*/
public GeometryDefinition(int level, int version) {
super(level, version);
}
/**
*
* @param id
* @param level
* @param version
*/
public GeometryDefinition(String id, int level, int version) {
super(id, level, version);
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase#equals(java.lang.Object)
*/
@Override
public boolean equals(Object object) {
boolean equal = super.equals(object);
if (equal) {
GeometryDefinition gd = (GeometryDefinition) object;
equal &= gd.isSetIsActive() == isSetIsActive();
if (equal && isSetIsActive()) {
equal &= gd.getIsActive() == getIsActive();
}
}
return equal;
}
/**
* Returns the value of isActive
*
* @return the value of isActive
*/
public Boolean getIsActive() {
if (isSetIsActive()) {
return isActive;
}
// This is necessary if we cannot return null here.
throw new PropertyUndefinedError(SpatialConstants.isActive, this);
}
/**
* @return
*/
public boolean isActive() {
return getIsActive();
}
/**
* Returns whether isActive is set
*
* @return whether isActive is set
*/
public boolean isSetIsActive() {
return isActive != null;
}
/**
* Sets the value of isActive
* @param isActive
*/
public void setIsActive(boolean isActive) {
Boolean oldIsActive = this.isActive;
this.isActive = isActive;
firePropertyChange(SpatialConstants.isActive, oldIsActive, this.isActive);
}
/**
* Unsets the variable isActive
*
* @return {@code true}, if isActive was set before,
* otherwise {@code false}
*/
public boolean unsetIsActive() {
if (isSetIsActive()) {
Boolean oldIsActive = isActive;
isActive = null;
firePropertyChange(SpatialConstants.isActive, oldIsActive, isActive);
return true;
}
return false;
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase#hashCode()
*/
@Override
public int hashCode() {
final int prime = 1559;
int hashCode = super.hashCode();
if (isSetIsActive()) {
hashCode += prime * getIsActive().hashCode();
}
return hashCode;
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase#writeXMLAttributes()
*/
@Override
public Map writeXMLAttributes() {
Map attributes = super.writeXMLAttributes();
if (isSetIsActive()) {
attributes.remove("isActive");
attributes.put(SpatialConstants.shortLabel + ":isActive", getIsActive().toString());
}
return attributes;
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase#readAttribute(java.lang.String, java.lang.String, java.lang.String)
*/
@Override
public boolean readAttribute(String attributeName, String prefix, String value) {
boolean isAttributeRead = (super.readAttribute(attributeName, prefix, value));
if (!isAttributeRead) {
isAttributeRead = true;
if (attributeName.equals(SpatialConstants.isActive)) {
try {
setIsActive(StringTools.parseSBMLBooleanStrict(value));
} catch (Exception e) {
AbstractReaderWriter.processInvalidAttribute(attributeName, null, value, prefix, this);
logger.warn(MessageFormat.format(
SpatialConstants.bundle.getString("COULD_NOT_READ_ATTRIBUTE"), value, SpatialConstants.isActive, getElementName()));
}
}
else {
isAttributeRead = false;
}
}
return isAttributeRead;
}
}