org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin Maven / Gradle / Ivy
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/*
* ----------------------------------------------------------------------------
* This file is part of JSBML. Please visit
* for the latest version of JSBML and more information about SBML.
*
* Copyright (C) 2009-2022 jointly by the following organizations:
* 1. The University of Tuebingen, Germany
* 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
* 3. The California Institute of Technology, Pasadena, CA, USA
* 4. The University of California, San Diego, La Jolla, CA, USA
* 5. The Babraham Institute, Cambridge, UK
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as .
* ----------------------------------------------------------------------------
*/
package org.sbml.jsbml.ext.spatial;
import java.text.MessageFormat;
import org.sbml.jsbml.Compartment;
import org.sbml.jsbml.ListOf;
import org.sbml.jsbml.PropertyUndefinedError;
/**
* @author Alex Thomas
* @author Andreas Dräger
* @author Piero Dalle Pezze
* @since 1.0
*/
public class SpatialCompartmentPlugin extends AbstractSpatialSBasePlugin {
/**
* Generated serial version identifier.
*/
private static final long serialVersionUID = 1363097365327594433L;
/* (non-Javadoc)
* @see org.sbml.jsbml.AbstractTreeNode#getParent()
*/
@SuppressWarnings("unchecked")
@Override
public ListOf getParent() {
if (isSetExtendedSBase()) {
return (ListOf) getExtendedSBase().getParent();
}
return null;
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.AbstractSBasePlugin#getParentSBMLObject()
*/
@Override
public ListOf getParentSBMLObject() {
return getParent();
}
/**
*
*/
private CompartmentMapping compartmentMapping;
/**
*
*/
public SpatialCompartmentPlugin() {
super();
}
/**
* @param compartment
*/
public SpatialCompartmentPlugin(Compartment compartment) {
super(compartment);
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.AbstractSBasePlugin#getExtendedSBase()
*/
@Override
public Compartment getExtendedSBase() {
if (isSetExtendedSBase()) {
return (Compartment) super.getExtendedSBase();
}
return null;
}
/**
* @param spatialCompartmentPlugin
*/
public SpatialCompartmentPlugin(
SpatialCompartmentPlugin spatialCompartmentPlugin) {
super(spatialCompartmentPlugin);
if (spatialCompartmentPlugin.isSetCompartmentMapping()) {
setCompartmentMapping(spatialCompartmentPlugin.getCompartmentMapping().clone());
}
}
/* (non-Javadoc)
* @see org.sbml.jsbml.AbstractSBase#clone()
*/
@Override
public SpatialCompartmentPlugin clone() {
return new SpatialCompartmentPlugin(this);
}
/**
* Returns the value of compartmentMapping
*
* @return the value of compartmentMapping
*/
public CompartmentMapping getCompartmentMapping() {
if (isSetCompartmentMapping()) {
return compartmentMapping;
}
// This is necessary if we cannot return null here.
throw new PropertyUndefinedError(SpatialConstants.compartmentMapping, this);
}
/**
* Returns whether compartmentMapping is set
*
* @return whether compartmentMapping is set
*/
public boolean isSetCompartmentMapping() {
return compartmentMapping != null;
}
/**
* Sets the value of compartmentMapping
* @param compartmentMapping
*/
public void setCompartmentMapping(CompartmentMapping compartmentMapping) {
CompartmentMapping oldCompartmentMapping = this.compartmentMapping;
this.compartmentMapping = compartmentMapping;
if (isSetExtendedSBase()) {
getExtendedSBase().registerChild(compartmentMapping);
}
firePropertyChange(SpatialConstants.compartmentMapping, oldCompartmentMapping, this.compartmentMapping);
}
/**
* Unsets the variable compartmentMapping
*
* @return {@code true}, if compartmentMapping was set before,
* otherwise {@code false}
*/
public boolean unsetCompartmentMapping() {
if (isSetCompartmentMapping()) {
CompartmentMapping oldCompartmentMapping = compartmentMapping;
compartmentMapping = null;
firePropertyChange(SpatialConstants.compartmentMapping, oldCompartmentMapping, compartmentMapping);
return true;
}
return false;
}
/* (non-Javadoc)
* @see javax.swing.tree.TreeNode#getAllowsChildren()
*/
@Override
public boolean getAllowsChildren() {
return true;
}
/* (non-Javadoc)
* @see javax.swing.tree.TreeNode#getChildCount()
*/
@Override
public int getChildCount() {
return isSetCompartmentMapping() ? 1 : 0;
}
/* (non-Javadoc)
* @see javax.swing.tree.TreeNode#getChildAt(int)
*/
@Override
public CompartmentMapping getChildAt(int index) {
if (index < 0) {
throw new IndexOutOfBoundsException(MessageFormat.format(
resourceBundle.getString("IndexSurpassesBoundsException"), index, 0));
}
int pos = 0;
if (isSetCompartmentMapping()) {
if (pos==index) {
return getCompartmentMapping();
}
pos++;
}
throw new IndexOutOfBoundsException(MessageFormat.format(
resourceBundle.getString("IndexExceedsBoundsException"), index,pos));
}
/* (non-Javadoc)
* @see org.sbml.jsbml.ext.AbstractSBasePlugin#hashCode()
*/
@Override
public int hashCode() {
final int prime = 1259;
int hashCode = super.hashCode();
if (isSetCompartmentMapping()) {
hashCode += prime * getCompartmentMapping().hashCode();
}
return hashCode;
}
}