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SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.
/*
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* SciJava Common shared library for SciJava software.
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* Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
* Institute of Molecular Cell Biology and Genetics.
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* modification, are permitted provided that the following conditions are met:
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* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
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package org.scijava.command.console;
import java.util.LinkedList;
import java.util.Map;
import org.scijava.command.CommandInfo;
import org.scijava.command.CommandService;
import org.scijava.console.AbstractConsoleArgument;
import org.scijava.console.ConsoleArgument;
import org.scijava.console.ConsoleUtils;
import org.scijava.log.LogService;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
/**
* @deprecated Use {@link org.scijava.run.console.RunArgument} instead.
*/
@Deprecated
@Plugin(type = ConsoleArgument.class)
public class RunArgument extends AbstractConsoleArgument {
@Parameter
private CommandService commandService;
@Parameter
private LogService log;
// -- Constructor --
public RunArgument() {
super(2, "--class");
}
// -- ConsoleArgument methods --
@Override
public void handle(final LinkedList args) {
if (!supports(args))
return;
log.warn("The --class flag is deprecated, and will\n" +
"be removed in a future release. Use --run instead.");
args.removeFirst(); // --class
final String commandToRun = args.removeFirst();
final String paramString = ConsoleUtils.hasParam(args) ? args.removeFirst() : "";
run(commandToRun, paramString);
}
// -- Typed methods --
@Override
public boolean supports(final LinkedList args) {
if (!super.supports(args))
return false;
return getInfo(args.get(1)) != null;
}
// -- Helper methods --
/** Implements the {@code --run} command line argument. */
private void run(final String commandToRun, final String optionString) {
// get the command info
final CommandInfo info = getInfo(commandToRun);
// couldn't find anything to run
if (info == null)
return;
// TODO: parse the optionString a la ImageJ1
final Map inputMap = ConsoleUtils.parseParameterString(optionString, info, log);
try {
commandService.run(info, true, inputMap).get();
} catch (final Exception exc) {
log.error(exc);
}
}
/**
* Try to convert the given string to a {@link CommandInfo}
*/
private CommandInfo getInfo(final String commandToRun) {
CommandInfo info = commandService.getCommand(commandToRun);
if (info == null) {
// command was not a class name; search for command by title instead
final String label = commandToRun.replace('_', ' ');
for (final CommandInfo ci : commandService.getCommands()) {
if (label.equals(ci.getTitle())) {
info = ci;
break;
}
}
}
return info;
}
}