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SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

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/*
 * #%L
 * SciJava Common shared library for SciJava software.
 * %%
 * Copyright (C) 2009 - 2017 Board of Regents of the University of
 * Wisconsin-Madison, Broad Institute of MIT and Harvard, Max Planck
 * Institute of Molecular Cell Biology and Genetics, University of
 * Konstanz, and KNIME GmbH.
 * %%
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 * 
 * 1. Redistributions of source code must retain the above copyright notice,
 *    this list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright notice,
 *    this list of conditions and the following disclaimer in the documentation
 *    and/or other materials provided with the distribution.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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package org.scijava.annotations;

import java.io.File;
import java.io.IOException;
import java.net.MalformedURLException;
import java.net.URL;
import java.net.URLClassLoader;
import java.util.HashSet;
import java.util.Set;
import java.util.jar.Attributes.Name;
import java.util.jar.JarFile;
import java.util.jar.Manifest;

import org.scijava.util.FileUtils;

/**
 * Helps Eclipse's lack of support for annotation processing in incremental
 * build mode.
 * 

* Eclipse has a very, let's say, "creative" way to interpret the Java * specifications when it comes to annotation processing: while Java mandates * that annotation processors need to be run after compiling Java classes, * Eclipse cops out of that because it poses a challenge to its incremental * compilation (and especially to Eclipse's attempt at compiling .class files * even from .java sources that contain syntax errors). *

*

* So we need to do something about this. Our strategy is to detect when the * annotation index was not updated properly and just do it ourselves, whenever * {@link Index#load(Class)} is called. *

*

* Since our aim here is to compensate for Eclipse's shortcoming, we need only * care about the scenario where the developer launches either a Java main class * or a unit test from within Eclipse, and even then only when the annotation * index is to be accessed. *

*

* The way Eclipse launches Java main classes or unit tests, it makes a single * {@link URLClassLoader} with all the necessary class path elements. Crucially, * the class path elements corresponding to Eclipse projects will never point to * {@code .jar} files but to directories. This allows us to assume that the * annotation classes as well as the annotated classes can be loaded using that * exact class loader, too. *

*

* It is quite possible that a developer may launch a main class in a different * project than the one which needs annotation indexing, therefore we need to * inspect all class path elements. *

*

* To provide at least a semblance of a performant component, before going all * out and indexing the annotations, we verify that the {@code META-INF/json/} * directory has an outdated timestamp relative to the {@code .class} files. If * that is not the case, we may safely assume that the annotation indexes are * up-to-date. *

*

* To avoid indexing class path elements over and over again which simply do not * contain indexable annotations, we make the {@code META-INF/json/} directory * nevertheless, updating the timestamp to reflect that we indexed the * annotations. *

* * @author Johannes Schindelin */ public class EclipseHelper extends DirectoryIndexer { private static final String FORCE_ANNOTATION_INDEX_PROPERTY = "force.annotation.index"; static Set indexed = new HashSet<>(); private boolean bannerShown; private static boolean debug = "debug".equals(System.getProperty("scijava.log.level")); private boolean autoDetectEclipse = true; private static void debug(final String message) { if (debug) { System.err.println(message); } } /** * Updates the annotation index in the current Eclipse project. *

* The assumption is that Eclipse -- after failing to run the annotation * processors correctly -- will launch any tests or main classes with a class * path that contains the project's output directory with the {@code .class} * files (as opposed to a {@code .jar} file). We only need to update that * first class path element (or for tests, the first two), and only if it is a * local directory. *

* * @param loader the class loader whose class path to inspect */ public static void updateAnnotationIndex(final ClassLoader loader) { debug("Checking class loader: " + loader); if (loader == null || !(loader instanceof URLClassLoader)) { debug("Not an URLClassLoader: " + loader); return; } EclipseHelper helper = new EclipseHelper(); if (Boolean.getBoolean(FORCE_ANNOTATION_INDEX_PROPERTY)) { helper.autoDetectEclipse = false; } boolean first = true; for (final URL url : ((URLClassLoader) loader).getURLs()) { debug("Checking URL: " + url); if (helper.autoDetectEclipse && first) { if (!"file".equals(url.getProtocol()) || (!url.getPath().endsWith("/") && !url.getPath().contains("surefire"))) { debug("Not Eclipse because first entry is: " + url); return; } first = false; } if (url.toString().endsWith("/./")) { // Eclipse never adds "." to the class path break; } helper.maybeIndex(url, loader); } updateAnnotationIndex(loader.getParent()); } private void maybeIndex(final URL url, final ClassLoader loader) { synchronized (indexed) { if (indexed.contains(url)) { return; } indexed.add(url); } if (!"file".equals(url.getProtocol())) { debug("Not a file URL: " + url); return; } File file = FileUtils.urlToFile(url); if (autoDetectEclipse && !file.isAbsolute()) { debug("Not an absolute file URL: " + url); return; } final String name = file.getName(); if (name.endsWith(".jar")) { if (!file.isFile()) { debug("Not a file: " + file); return; } /* * To support mixed development with Eclipse and Maven, let's handle * the case where Eclipse compiled classes, did not run the annotation * processors, then the developer called "mvn test". In this case, we * have a surefirebooter.jar whose manifest contains the dependencies, * but crucially also the target/classes/ and target/test-classes/ * directories which may need to be indexed. */ if (!autoDetectEclipse || url.toString().matches(".*/target/surefire/surefirebooter[0-9]*\\.jar")) try { final JarFile jar = new JarFile(file); Manifest manifest = jar.getManifest(); if (manifest != null) { final String classPath = manifest.getMainAttributes().getValue(Name.CLASS_PATH); if (classPath != null) { for (final String element : classPath.split(" +")) try { maybeIndex(new URL(url, element), loader); } catch (MalformedURLException e) { e.printStackTrace(); } } } } catch (final IOException e) { System.err.println("Warning: could not index annotations due to "); e.printStackTrace(); } return; } if (!file.isDirectory()) { return; } index(file, loader); } private void index(File directory, ClassLoader loader) { debug("Directory: " + directory); if (!directory.canWrite() || upToDate(directory) || isIJ1(directory)) { debug("can write: " + directory.canWrite() + ", up-to-date: " + upToDate(directory) + ", : is IJ1: " + isIJ1(directory)); return; } final File jsonDirectory = new File(directory, Index.INDEX_PREFIX); try { discoverAnnotations(directory, "", loader); if (!jsonDirectory.exists() && !foundAnnotations()) return; if (!bannerShown) { System.err.println("[ECLIPSE HELPER] Indexing annotations..."); bannerShown = true; } write(directory); } catch (IOException e) { e.printStackTrace(); } // update the timestamp of META-INF/json/ if (jsonDirectory.isDirectory()) { jsonDirectory.setLastModified(System.currentTimeMillis()); } else { jsonDirectory.mkdirs(); } } /** * A hacky way of detecting whether the given directory is the root of an * ImageJ1 codebase containing unpacked ImageJ1 classes. */ private boolean isIJ1(File directory) { return new File(directory, "IJ_Props.txt").exists(); } private boolean upToDate(final File directory) { final File jsonDirectory = new File(directory, Index.INDEX_PREFIX); if (!jsonDirectory.isDirectory()) { return false; } return upToDate(directory, jsonDirectory.lastModified()); } private boolean upToDate(File directory, long lastModified) { if (directory.lastModified() > lastModified) { return false; } final File[] list = directory.listFiles(); if (list != null) { for (final File file : list) { if (file.isFile()) { if (file.lastModified() > lastModified) { return false; } } else if (file.isDirectory()) { if (!upToDate(file, lastModified)) { return false; } } } } return true; } /** * Updates the annotation index in the current Eclipse project. *

* The assumption is that Eclipse -- after failing to run the annotation * processors correctly -- will launch any tests or main classes with a class * path that contains the project's output directory with the {@code .class} * files (as opposed to a {@code .jar} file). We only need to update that * first class path element (or for tests, the first two), and only if it is a * local directory. *

*/ public static void main(final String... args) { System.setProperty(FORCE_ANNOTATION_INDEX_PROPERTY, "true"); updateAnnotationIndex(Thread.currentThread().getContextClassLoader()); } }




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