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Image processing operations for SciJava Ops.
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/*
* #%L
* Image processing operations for SciJava Ops.
* %%
* Copyright (C) 2014 - 2024 SciJava developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package org.scijava.ops.image.adapt;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.algorithm.neighborhood.Neighborhood;
import net.imglib2.algorithm.neighborhood.Shape;
import net.imglib2.loops.LoopBuilder;
import net.imglib2.outofbounds.OutOfBoundsFactory;
import net.imglib2.outofbounds.OutOfBoundsMirrorFactory;
import net.imglib2.view.Views;
import org.scijava.function.Computers;
public final class LiftNeighborhoodComputersToRAI {
private LiftNeighborhoodComputersToRAI() {
// prevent instantiation of static utility class
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static
Computers.Arity2, Shape, RandomAccessibleInterval>
adapt1UsingShape(Computers.Arity1, U> op)
{
OutOfBoundsMirrorFactory> oobf //
= new OutOfBoundsMirrorFactory<>(
OutOfBoundsMirrorFactory.Boundary.SINGLE);
return (in, shape, out) -> {
var extended = Views.extend(in, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in);
LoopBuilder.setImages(intervaled, out).forEachPixel(op);
};
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static , G extends F>
Computers.Arity3, RandomAccessibleInterval>
adapt1UsingShapeAndOOBF(Computers.Arity1, U> op)
{
return (in, shape, oobf, out) -> {
var extended = Views.extend(in, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in);
LoopBuilder.setImages(intervaled, out).forEachPixel(op);
};
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static
Computers.Arity3, V, Shape, RandomAccessibleInterval>
adapt2UsingShape(Computers.Arity2, V, U> op)
{
OutOfBoundsMirrorFactory> oobf //
= new OutOfBoundsMirrorFactory<>(
OutOfBoundsMirrorFactory.Boundary.SINGLE);
return (in1, in2, shape, out) -> {
var extended = Views.extend(in1, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in1);
LoopBuilder.setImages(intervaled, out).forEachPixel((in, container) -> op
.compute(in, in2, container));
};
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static >
Computers.Arity4, RandomAccessibleInterval>
adapt2UsingShapeAndOOBF(Computers.Arity2, V, U> op)
{
return (in1, in2, shape, oobf, out) -> {
var extended = Views.extend(in1, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in1);
LoopBuilder.setImages(intervaled, out).forEachPixel((in, container) -> op
.compute(in, in2, container));
};
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static
Computers.Arity4, V, W, Shape, RandomAccessibleInterval>
adapt3UsingShape(Computers.Arity3, V, W, U> op)
{
OutOfBoundsMirrorFactory> oobf //
= new OutOfBoundsMirrorFactory<>(
OutOfBoundsMirrorFactory.Boundary.SINGLE);
return (in1, in2, in3, shape, out) -> {
var extended = Views.extend(in1, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in1);
LoopBuilder.setImages(intervaled, out).forEachPixel((in, container) -> op
.compute(in, in2, in3, container));
};
}
/**
* @param op the original Op, operating on {@link Neighborhood}s
* @return {@code op} lifted to operate on {@link RandomAccessibleInterval}s.
* @implNote op names='engine.adapt', priority='100.', type=Function
*/
public static >
Computers.Arity5, RandomAccessibleInterval>
adapt3UsingShapeAndOOBF(Computers.Arity3, V, W, U> op)
{
return (in1, in2, in3, shape, oobf, out) -> {
var extended = Views.extend(in1, oobf);
var neighborhoods = shape.neighborhoodsRandomAccessible(extended);
var intervaled = Views.interval(neighborhoods, in1);
LoopBuilder.setImages(intervaled, out).forEachPixel((in, container) -> op
.compute(in, in2, in3, container));
};
}
}
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