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Image processing operations for SciJava Ops.
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/*
* #%L
* Image processing operations for SciJava Ops.
* %%
* Copyright (C) 2014 - 2024 SciJava developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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package org.scijava.ops.image.create;
import java.util.function.BiFunction;
import net.imglib2.Cursor;
import net.imglib2.Dimensions;
import net.imglib2.FinalInterval;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.img.Img;
import net.imglib2.type.Type;
import net.imglib2.type.numeric.ComplexType;
import net.imglib2.util.Util;
import net.imglib2.view.Views;
/**
* Creates a Gaussian Kernel
*
* @author Christian Dietz (University of Konstanz)
* @author Martin Horn (University of Konstanz)
* @author Michael Zinsmaier (University of Konstanz)
* @author Stephan Sellien (University of Konstanz)
* @author Brian Northan
* @author Gabriel Selzer
*/
public final class DefaultCreateKernelGauss {
private DefaultCreateKernelGauss() {
// Prevent instantiation of static utility class
}
public static , C extends ComplexType>
RandomAccessibleInterval createKernel(double[] input, C type,
BiFunction> imgFromDimsAndType)
{
final double[] sigmaPixels = new double[input.length];
final long[] dims = new long[input.length];
final double[][] kernelArrays = new double[input.length][];
for (int d = 0; d < input.length; d++) {
sigmaPixels[d] = input[d];
dims[d] = Math.max(3, 2 * (int) (3 * sigmaPixels[d] + 0.5) + 1);
kernelArrays[d] = Util.createGaussianKernel1DDouble(sigmaPixels[d], true);
}
final RandomAccessibleInterval out =
(RandomAccessibleInterval) imgFromDimsAndType.apply(new FinalInterval(
dims), (T) type);
final Cursor cursor = Views.iterable(out).cursor();
while (cursor.hasNext()) {
cursor.fwd();
double result = 1.0f;
for (int d = 0; d < input.length; d++) {
result *= kernelArrays[d][cursor.getIntPosition(d)];
}
cursor.get().setReal(result);
}
return out;
}
}
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