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Image processing operations for SciJava Ops.
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/*
 * #%L
 * Image processing operations for SciJava Ops.
 * %%
 * Copyright (C) 2014 - 2024 SciJava developers.
 * %%
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 * 
 * 1. Redistributions of source code must retain the above copyright notice,
 *    this list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright notice,
 *    this list of conditions and the following disclaimer in the documentation
 *    and/or other materials provided with the distribution.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 * POSSIBILITY OF SUCH DAMAGE.
 * #L%
 */

package org.scijava.ops.image.labeling.cca;

import java.util.Iterator;
import java.util.concurrent.ExecutorService;
import java.util.function.BiFunction;

import org.scijava.concurrent.Parallelization;
import org.scijava.function.Functions;
import org.scijava.ops.spi.Nullable;
import org.scijava.ops.spi.OpDependency;

import net.imglib2.Dimensions;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.algorithm.labeling.ConnectedComponents;
import net.imglib2.algorithm.labeling.ConnectedComponents.StructuringElement;
import net.imglib2.roi.labeling.ImgLabeling;
import net.imglib2.type.numeric.IntegerType;
import net.imglib2.type.numeric.integer.IntType;

/**
 * Default Implementation wrapping {@link ConnectedComponents} of
 * ImgLib2-algorithms.
 *
 * @author Christian Dietz (University of Konstanz)
 * @implNote op names='labeling.cca', priority='1.0'
 */
public class DefaultCCA, L, I extends IntegerType>
	implements
	Functions.Arity3, StructuringElement, Iterator, ImgLabeling>
{

	@OpDependency(name = "create.imgLabeling")
	private BiFunction> imgLabelingCreator;

	/**
	 * TODO
	 *
	 * @param input
	 * @param se
	 * @param labelGenerator
	 * @return the {@link ImgLabeling}
	 */
	@Override
	@SuppressWarnings("unchecked")
	public ImgLabeling apply( //
		final RandomAccessibleInterval input, //
		final StructuringElement se, //
		@Nullable Iterator labelGenerator //
	) {
		if (labelGenerator == null) {
			labelGenerator = new DefaultLabelIterator();
		}
		ImgLabeling output =
			(ImgLabeling) imgLabelingCreator.apply(input,
				new IntType());
		ExecutorService es = Parallelization.getExecutorService();
		ConnectedComponents.labelAllConnectedComponents(input, output,
			labelGenerator, se, es);
		return output;
	}

}

/*
 * Simple Default LabelIterator providing integer labels, starting from zero.
 */
class DefaultLabelIterator implements Iterator {

	private Integer i = 0;

	@Override
	public boolean hasNext() {
		return i < Integer.MAX_VALUE;
	}

	@Override
	public Integer next() {
		return i++;
	}

	@Override
	public void remove() {
		throw new UnsupportedOperationException();
	}
}